Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0567 ATGGCGGAGCGTGATTCTTACGGGCTGGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGATGGTTGCGGCCTGCTGAAATTTGTGAAATTCTTCATAATTATCAGATGTTTCATATCACATCAGAACCTCCAAACGTGCCACCGAGTGGTTCACTTTTTCTTTTTGATAGGAAGGTATTGAGGTATTTTAGAAAGGATGGACATAACTGGAGAAAGAAAAAGGATGGAAAGACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTATTACATTGCTACTATGCTCATGGTGAAGAAAACGAAAATTTCCAGAGGCGAAGCTATTGGTTGCTTGAACAGGATATGATGCACATTGTTTTCGTCCACTACTTGGAAGTTAAGGGTCATAGGACAAGTGTTGGAGTAAAACCAGATACTGATGAGGTTTCATCAGATTCTCAAAGAGGCAGCTCTGCATCATCTGCTTTGTCGAGAACTTATAATACTGTGCCTTCAAGAAGTACAGACTCCATGAGCCCAACTAGCACTTTGACATCCTTATGTGAAGATGCTGACTCTGGGTATCTTGCACGGTCATTGGTTTCTGGAGCAGACCATATTTCACAAGTTCAGCTAGATAAGCATAGAGGCAGTGATGCTAGTACTTCTTTCATTGATGGCCAAAAAACAAATGGAATAGCCTTACGGGACAATGTCTTTGAACAAGGTATAAGTGGATTATCTACTGATCCATCCCTTGTATCATTTACTTCCATCCCATCCAATTCAATAGGAAACATTCTTGAACCAGAAAATACTGTTCCGGGTGATCTTTTAGCCATAAACAATGTCCTCATTGGGCCAGCTGGGAGTTCTCAGTCTCTACAATCAAATTGGCAGATCCCTTTTGAAAGTAATCCAGGAAAGATGTCCAAAGATTTTACATCCCAATCGTTGGGTTTGGAATGTGGATCTGATTTTAGCAATGGTTTGCTGGAACATGAAATGCATAATCATGTTGCTTCTGGTCCTGTAACTTTTATCTGTCAGCGAAAAGAGGAGCCTGTGCTGGGAAACTTTCCAGAACAGCATACAGATACTCAATCTCAAATTTTGCTGAAATACAATTATGGGAATGAAGTTCCCACAAAAGAAAGTATTAATTATGCCTTGACTGTGAAGCGGTCCTTAATAGATGGGGAGGAAAGCCTAAAGAAAGTTGACAGCTTCTCTCGATGGATTACTAAAGAACTTGAAGAGGTGGACGACCTTAATATGCAGTCATCACATGGCATTTCTTGGAGCGCTGATGAATGTGGGCATGTGATAGATGATTCCTCATTGAGCCCCTCCCTCTCTCAGGACCAGCTGTTCAGCGTAAATGATTTTTCACCTAACTGGGCTTATGCTGAATCAGAAACTGAGGTTTTGATCATTGGAACATTTTTGAAGAGTCAAACAGAGGTAGCAAATCGCAACTGGTCGTGCATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTCTAGCCAATGGAATTTTGTGCTGTCAGGCTCCACCTCTCAAAGTTGGACGGGTTCCCTTCTATGTAACATGCTCCAATAGGTTGGCTTGCAGTGAAGTGCGGGAATTTGATTACACAGAGAGCTTCGCCAAAAATGTTGATGTTTCAGATTTCTATAACAGTGCAACTGAGATACAGCTTCATCTCAGACTAGAGAAGCTACTTTCCTCAAAATCAGCGCTCCCTTCAAATTACAACTTTGACAATGATATGGTGAAAAGAAACTTAATGTTTAAGCTCATTACGCTAAAAGAGGAAGAGGCGATCGCAGACAGGGAAGAGCTGATGTCAGAGAGCAATGCTTCCCAGCAAAAGGTGAAGGAGTTAATGTTTCACAGGCAAGTTAAAGAGAAGCTGTACTCTTGGCTGGTTCACAAAGCAATTGAAGATGATAAAGGGCCAAATGTTTTGGATGAAGAGGGGCAAGGCGTGCTTCATTTAGCAGCTGCTCTTGGTTATGAGTGGGCAATAATGCCAATCGTTACTGCTGGAGTAAATATCAATTTTCGGGATGTGAATGGATGGACAGCTCTGCACTGGGCTGCATCATATGGCAGGGAACGGACAGTTGCTGTACTTGTCTCCATGGGTGCAGCTACTGGAGCATTGACAGATCCATCCCCAACGTTTCCATTGGGAAGAACAGCAGCAGATCTTGCTTCTAGCAATGGGCACAAAGGAATCTCTGGTTTCCTTGCAGAGTGTTCATTAACCAGCCACCTTTCAACCCTCACAATGAATGATCAGAAGGGAGATGTTAGGCAAAGAGCTTCAGAAGTAGAAGTAGTACAGACAGTTTCAAAACGAACTGTAACTCAAGGGTTTAGCGGTGATATGCCAGATTCCCTCAGCCTTAAGGATTCCCTTACTGCTGTTCGTAATGCTACACAGGCGGCTGATCGTATATACCAAGTATTCAGAATGCAATCATTTCAGAGGAAGCAGTTGACCGAGTTTGAAGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCCCTTATAGCTTCTAAGGGATGCAAGGCTGGATATGGAGATGATTTAGCCCATATTGCTGCTGTGCAAATACAGAAAAAGTTTCGTGGATGGAAGAAAAGAAAAGAATTTCTAATAATTCGTCGAAGAATTGTTAAAATTCAGGCCCATGTGAGAGGTCATCAGGTAAGGAAGCAGAATAAGTCAGTCATCTGGTCCGTGGGAATTTTGGAGAAGGTAATACTGCGATGGAGACGCAAGGGCAGTGGTCTACGTGGCTTTCGACCAGATGCTAATAAAACCCCCCACCAAGAAGATGATACTGTGAAAGAGGATAATTACGATGTTCTCAAGGAAGGGAGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCACTTTCGAGGGTGAAGTCTATGGTTCAGTATCCAGAGGCACGTGCTCAGTACCAGCGTCTGCTAAACGTTGTTGAGGAATTCCAGCGAACCAAGGCATGCGACGTGGATGTGATCAATTCAGAAGAGACAGTCGATGGTGTAGAGGACCTTATTGATATTAACATGCTCTTAGATGATGACAATTTCATACCGTTAGCATTTGATTGA 3141 0.4276 MAERDSYGLGPRLDIQQLQFEAQHRWLRPAEICEILHNYQMFHITSEPPNVPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWLLEQDMMHIVFVHYLEVKGHRTSVGVKPDTDEVSSDSQRGSSASSALSRTYNTVPSRSTDSMSPTSTLTSLCEDADSGYLARSLVSGADHISQVQLDKHRGSDASTSFIDGQKTNGIALRDNVFEQGISGLSTDPSLVSFTSIPSNSIGNILEPENTVPGDLLAINNVLIGPAGSSQSLQSNWQIPFESNPGKMSKDFTSQSLGLECGSDFSNGLLEHEMHNHVASGPVTFICQRKEEPVLGNFPEQHTDTQSQILLKYNYGNEVPTKESINYALTVKRSLIDGEESLKKVDSFSRWITKELEEVDDLNMQSSHGISWSADECGHVIDDSSLSPSLSQDQLFSVNDFSPNWAYAESETEVLIIGTFLKSQTEVANRNWSCMFGEVEVPAEVLANGILCCQAPPLKVGRVPFYVTCSNRLACSEVREFDYTESFAKNVDVSDFYNSATEIQLHLRLEKLLSSKSALPSNYNFDNDMVKRNLMFKLITLKEEEAIADREELMSESNASQQKVKELMFHRQVKEKLYSWLVHKAIEDDKGPNVLDEEGQGVLHLAAALGYEWAIMPIVTAGVNINFRDVNGWTALHWAASYGRERTVAVLVSMGAATGALTDPSPTFPLGRTAADLASSNGHKGISGFLAECSLTSHLSTLTMNDQKGDVRQRASEVEVVQTVSKRTVTQGFSGDMPDSLSLKDSLTAVRNATQAADRIYQVFRMQSFQRKQLTEFEDDEFGLSDQQALSLIASKGCKAGYGDDLAHIAAVQIQKKFRGWKKRKEFLIIRRRIVKIQAHVRGHQVRKQNKSVIWSVGILEKVILRWRRKGSGLRGFRPDANKTPHQEDDTVKEDNYDVLKEGRKQSEERFQKALSRVKSMVQYPEARAQYQRLLNVVEEFQRTKACDVDVINSEETVDGVEDLIDINMLLDDDNFIPLAFD 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0567 1046 FunFam Calmodulin-binding transcription activator 2 455 551 - -
Lele13g0567 1046 Pfam Ankyrin repeats (3 copies) 667 756 IPR002110 GO:0005515
Lele13g0567 1046 ProSiteProfiles IQ motif profile. 871 900 IPR000048 GO:0005515
Lele13g0567 1046 ProSiteProfiles Ankyrin repeat region circular profile. 695 720 - -
Lele13g0567 1046 Gene3D - 615 761 IPR036770 -
Lele13g0567 1046 SUPERFAMILY Ankyrin repeat 648 757 IPR036770 -
Lele13g0567 1046 Pfam IQ calmodulin-binding motif 874 891 IPR000048 GO:0005515
Lele13g0567 1046 Pfam IQ calmodulin-binding motif 895 913 IPR000048 GO:0005515
Lele13g0567 1046 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lele13g0567 1046 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lele13g0567 1046 MobiDBLite consensus disorder prediction 146 186 - -
Lele13g0567 1046 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lele13g0567 1046 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1008 - -
Lele13g0567 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 869 920 IPR027417 -
Lele13g0567 1046 Pfam IPT/TIG domain 462 540 IPR002909 -
Lele13g0567 1046 SMART ANK_2a 695 724 IPR002110 GO:0005515
Lele13g0567 1046 SMART ANK_2a 662 691 IPR002110 GO:0005515
Lele13g0567 1046 SMART ANK_2a 734 763 IPR002110 GO:0005515
Lele13g0567 1046 FunFam Calmodulin-binding transcription activator 2 870 918 - -
Lele13g0567 1046 SUPERFAMILY E set domains 462 547 IPR014756 -
Lele13g0567 1046 Gene3D - 870 917 - -
Lele13g0567 1046 Gene3D Immunoglobulins 455 551 IPR013783 -
Lele13g0567 1046 MobiDBLite consensus disorder prediction 144 186 - -
Lele13g0567 1046 ProSiteProfiles Ankyrin repeat profile. 662 694 IPR002110 GO:0005515
Lele13g0567 1046 SMART iq_5 870 892 IPR000048 GO:0005515
Lele13g0567 1046 SMART iq_5 893 915 IPR000048 GO:0005515
Lele13g0567 1046 ProSiteProfiles Ankyrin repeat profile. 695 727 IPR002110 GO:0005515
Lele13g0567 1046 ProSiteProfiles IQ motif profile. 894 918 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0567 Lele-ChrLele13 17859346 17870802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0567 1 1027 CAMTA Transcription Factor Family AT5G64220 51.356 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lele13g0567 CG-1 6.8e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0480 14 16464300 16468580 Lele13g0567 13 17859346 17870802 CCT
Lele15g1905 15 11757378 11759039 Lele13g0567 13 17859346 17870802 CCT
Lele16g1933 16 11697689 11703449 Lele13g0567 13 17859346 17870802 CCT
Lele13g0567 13 17859346 17870802 Lele13g0552 13 17766741 17768610 CCT
Lele13g0567 13 17859346 17870802 Lele14g0454 14 16202813 16204093 CCT
Lele13g0567 13 17859346 17870802 Lele15g1931 15 12027440 12028672 CCT
Lele13g0567 13 17859346 17870802 Lele16g1961 16 11936236 11939630 CCT
Lele13g0567 13 17859346 17870802 Lele15g1917 15 11903105 11913865 hybridization
Lele13g0567 13 17859346 17870802 Lele16g1945 16 11808042 11818298 hybridization