Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0562 ATGTCTCACTTTGGAAGGTCGGGTCCTCCAGACATCACTGACACATATTCGCTTCTAGTGCTCAACATAACATTCCGTACAACAGCTGATGACCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATTCCCAGAGACCGAAGGACTGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGACGAGGCACAAAAGGCTGTGGACAGGCTGGACGGAAGAGTGGTTGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCAAATGCAGAGAAGATCTTGTCTGAAGTGTTTCAAATTGTTTGGTTCAATTATGCCCATGTAGATTTCGCAAAGGAAGGATTATTGAAACGTTCCCCAAGCCTAGGTACAGGTCAAGGAGCCGCAGCCCCAGGAGAAGGCATCGTGATGATTACAGGGACAGGGATTATAGGAGGAGGGGTCGCAGCAGGAGCTTTGATAGGTATGAAAGGGATAGGTATCGTGGAGGGGACAGAGATTATCGCCACAGGAGTAGAAGCCGTAGTGCAAGTCCTGATTACCATAAGAGTCGTGGAAGGGATCGCTATGATGATGAGCATCAAGGCCGAAGTCGATCTTTGGATAGTCGCTCCCCTGCGCGACATAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGCTTCCCCTCATAGAAGTATTTCCCCAAGGAACCCAAGGGGTGAAAGCCCTGAGAGTCATAGTCGTGATGGACGATCGCCTATGCCTCGCAGTGTTTCACCACGTGGTCAACCCAAGGATTCAAGAAGCCCATCCCCTTGAAATTCCAATGGAGATGAATGAGAACAAGGTTTCTGATATAAAGTTCTGA 879 0.4835 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKILSEVFQIVWFNYAHVDFAKEGLLKRSPSLGTGQGAAAPGEGIVMITGTGIIGGGVAAGALIGMKGIGIVEGTEIIATGVEAVVQVLITIRVVEGIAMMMSIKAEVDLWIVAPLRDIVLVLEGVLHLKGVLPLIEVFPQGTQGVKALRVIVVMDDRLCLAVFHHVVNPRIQEAHPLEIPMEMNENKVSDIKF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0562 292 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lele13g0562 292 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Lele13g0562 292 Gene3D - 4 100 IPR012677 -
Lele13g0562 292 CDD RRM_SRSF2_SRSF8 18 90 - -
Lele13g0562 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lele13g0562 292 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 95 - -
Lele13g0562 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lele13g0562 292 SUPERFAMILY RNA-binding domain, RBD 9 96 IPR035979 GO:0003676
Lele13g0562 292 SMART rrm2_1 17 90 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0562 Lele-ChrLele13 17825526 17828474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0562 13 96 Eukaryotic Initiation Factors Gene Family AT3G11400 34.524 1.79e-09 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0562 13 17825526 17828474 Lele15g1921 15 11951889 11954777 hybridization
Lele13g0562 13 17825526 17828474 Lele16g1949 16 11867825 11870730 hybridization