Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0548 ATGTCGAACTTCTTCGCGACCACTACAAATCCAAATCCCAACAAGTCCTTTGAGGTGACTCATCCTCCTGATGATTCTGTTGCTAGTCTTAGCTTCAGTCCCAAAGCCAACTTTCTCGTAGCCACTTCATGGGACAACCAGGTTCGATGTTGGGAGATAGCGCGGAATGGGGTAAATGTTGCCAGTGTGCCCAAGGCATCTATATCACATGACCAGCCGGTTTTATGTTCAGCTTGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGTTGTGATAAGCAAGTGAAGATGTGGCCTCTGTTATCTGGAGGCCAACCAATGACTGTTGCTATGCATGATGCGCCAATCAAAGAAGTAGCTTGGATTCCTGAGATGAGCCTGTTAGTAACTGGAAGCTGGGACAAGACTATGAAGTACTGGGATACTAGGCAGCCAAATCCAGTGCACACACAACAACTCCCTGAACGATGTTATGCAATGACAGTGAGACATCCTCTGATGGTTGTTGGCACTGCTGATAGAAATCTAATAGTTTACAACTTGCAAAATCCTCAGGTTGAATTCAAGAGAATTACTTCACCCTTGAAGTATCAGACGAGGTGCCTTGCTGCTTTTCCTGATCAACAAGGTTTCTTGGTTGGATCGATCGAAGGGAGAGTCGGGGTGCATCATTTGGATGATAGCCAACAGAGTAAAAACTTCACTTTCAAATGCCACAGAGAGGGCAATGAGATATACTCAGTCAACTCTTTAAACTTCCATCCTGTACATCACACATTTGCAACTGCGGGTTCTGATGGTGCTTTTAACTTTTGGGACAAGGATAGCAAACAGAGACTTAAGGCCATGTTAAGGTGCAGTCAACCTATTCCATGTAGTGCCTTCAACAATGATGGTTCAATCTTTGCTTACTCGGTATGCTATGACTGGAGCAAAGGGGCTGAAAATCATAATCCTGCGACAGCAAAGAATTACATTTTCCTGCACTTGCCACAGGAATCTGAGGTTAAGGGCAAACCTCGACTTGGAACTACTGGGAGGAAGTAG 1047 0.4508 MSNFFATTTNPNPNKSFEVTHPPDDSVASLSFSPKANFLVATSWDNQVRCWEIARNGVNVASVPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEVAWIPEMSLLVTGSWDKTMKYWDTRQPNPVHTQQLPERCYAMTVRHPLMVVGTADRNLIVYNLQNPQVEFKRITSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQSKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKNYIFLHLPQESEVKGKPRLGTTGRK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 20 53 IPR001680 GO:0005515
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Lele13g0548 348 Gene3D - 5 342 IPR015943 GO:0005515
Lele13g0548 348 SUPERFAMILY WD40 repeat-like 22 305 IPR036322 GO:0005515
Lele13g0548 348 FunFam protein RAE1 isoform X1 3 342 - -
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 108 IPR001680 GO:0005515
Lele13g0548 348 Pfam WD domain, G-beta repeat 112 141 IPR001680 GO:0005515
Lele13g0548 348 Pfam WD domain, G-beta repeat 15 51 IPR001680 GO:0005515
Lele13g0548 348 Pfam WD domain, G-beta repeat 234 273 IPR001680 GO:0005515
Lele13g0548 348 Pfam WD domain, G-beta repeat 69 98 IPR001680 GO:0005515
Lele13g0548 348 MobiDBLite consensus disorder prediction 1 19 - -
Lele13g0548 348 PRINTS G protein beta WD-40 repeat signature 39 53 IPR020472 -
Lele13g0548 348 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Lele13g0548 348 PRINTS G protein beta WD-40 repeat signature 260 274 IPR020472 -
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 67 98 - -
Lele13g0548 348 MobiDBLite consensus disorder prediction 1 21 - -
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 20 53 - -
Lele13g0548 348 PANTHER MRNA EXPORT FACTOR AND BUB3 8 335 - -
Lele13g0548 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 282 IPR001680 GO:0005515
Lele13g0548 348 SMART WD40_4 229 273 IPR001680 GO:0005515
Lele13g0548 348 SMART WD40_4 61 99 IPR001680 GO:0005515
Lele13g0548 348 SMART WD40_4 10 52 IPR001680 GO:0005515
Lele13g0548 348 SMART WD40_4 144 180 IPR001680 GO:0005515
Lele13g0548 348 SMART WD40_4 102 141 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0548 Lele-ChrLele13 17717281 17724024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0548 68 299 Miscellaneous Gene Families AT5G08390 24.167 3.30e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0548 13 17717281 17724024 Lele13g0548 13 17717281 17724024 ECH
Lele13g0548 13 17717281 17724024 Lele15g1936 15 12091453 12098227 hybridization
Lele13g0548 13 17717281 17724024 Lele16g1970 16 12029027 12032556 hybridization