Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0546 ATGGGTGTTTTACTCTGTGCAATTTTAGTTCTTGATTTGTTGGCAAATGTTTCTGGTAATGCTGAAGGTGATGCCCTATATGCATTTAAGACCAACGTAGTTGATCCAAACAATCTTCTTCATACCTGGGATCCTACCCTTGTCAATCCTTGCACGTGGTTTCACGTTACGTGCAATATTGATAACACTGTGACCCGTGTTGAACTTGGAAATGCCAACCTTACGGGTCTGCTAGTTGCACAGCTTGGTCAACTCCGAAATTTGCAGTACTTGGAACTTTTTAGTAATAATATAACTGGAAAAATCCCAGCTGAATTTGGAAATTTGACAAATTTGGTGAGCTTGGATCTGTACATGAATCGTATATCTGGTAGCATCCCTGAAACATTGGGCAAGCTTCAAAAACTACGTTCCCTGCGTCTCCACAATAACAGCTTGACAGGAGTCATTCCCATGACCTTGACTACCGTTAATTCACTGCAAGTCCTTGATCTTTCAAATAACCAGCTAGAAGGAGACATACCTGTCAATGGCTCATTTCAATTGTTTACTCCACTCAGTTTCGGAGACAATCCTCATTTGAGACCAATAAACCTAACACCTGGACCAGTGTTGCCAACACCTCCAGGCAATAGTGGAACTGGAGTTATTGCTGCAGGAGTTGGTGCTGCTGCTGTGGTGTTTACAGCCTCTGCAATTGCACTTGCTTATTATTACTGGAAAAGGATTCCACTTGCTTACTGCTGGAAAAGGAGACCGCCATATTATGCCTTTGATGTTTATGATGAGGAGGAGCTTGAAGCTCACTTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAACTTCAAGTTGCAACAGACAACTTTAATAACAAAAACATTCTGGGTAGAGGTGGATTTGGTAAGGTTTATAAAGGACGGTTGAATGATGGATCTTTAGTTGCAGTGAAAAGACTTAAAAAGGAAGGTGCTCAGGGTGGAGAGCTGCAATTTCTAACAGAAGTAAAAATGATCAGCTTGGCTGTCCATCGTAATTTGCTCCGGCTTCATGGTTTTTGCATGACTCCAACTGAACGGTTGCTTGTGTATCCTTTCATGGCTAACGGTAGTGTGGCATCATGTTTACGAGACCGCTCTAAATCAAAACCCATGCTTGAATGGCCTGTACGGAAGCGAATTGCATTGGGAGCTGCGAGGGGGCTTGCTTATTTACATGATGATTGTGATCCAAAGATCATTCACCGTGATGTTAAAGCCGCAAATATATTGTTGGATGACGAATATGAAGCAGTTGTTGGGGACTTTGGCTTGGCAAAACTTATGGATTACGAAGATACTCATGTTACCACAGCTGTACGTGGTACAATTGGGTACATTGCACCAGAATACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTATGGTTATGGTATAATGCTTCTAGAACTAATCACTGGACAGAGGGCTTTTGATCTAGCACGACGTGCCGTTGATGATAATGTCTTATTACTTGATTGGGTGAAAGGGCTTTTGAAAGACAAGAGATTGGAAACACTAGTTGATGCTGATTTGTGGGGTAAATATAATGAAGAGGAGGCGGAGCAACTAATCAAATTGGCTTTGCTCTGCACAAAATGGTCAGCCATGGAAAGACCGAAGATGTCTGAGGTGGTACAGATGCTTGAAGGTGATGGTTTAGCTGAAAAATTGGATCAATGGCAGAAAGACAAGATGCATCGACAAGATAATCAAACCCTTCTCCCTAACGATAATTGGTCGATTATCGACTCGACATCACATATCCCCCCAGATGAACTCTCAGGTCCCAGATGA 1836 0.4237 MGVLLCAILVLDLLANVSGNAEGDALYAFKTNVVDPNNLLHTWDPTLVNPCTWFHVTCNIDNTVTRVELGNANLTGLLVAQLGQLRNLQYLELFSNNITGKIPAEFGNLTNLVSLDLYMNRISGSIPETLGKLQKLRSLRLHNNSLTGVIPMTLTTVNSLQVLDLSNNQLEGDIPVNGSFQLFTPLSFGDNPHLRPINLTPGPVLPTPPGNSGTGVIAAGVGAAAVVFTASAIALAYYYWKRIPLAYCWKRRPPYYAFDVYDEEELEAHFGQLKKFPLRELQVATDNFNNKNILGRGGFGKVYKGRLNDGSLVAVKRLKKEGAQGGELQFLTEVKMISLAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRDRSKSKPMLEWPVRKRIALGAARGLAYLHDDCDPKIIHRDVKAANILLDDEYEAVVGDFGLAKLMDYEDTHVTTAVRGTIGYIAPEYLSTGKSSEKTDVYGYGIMLLELITGQRAFDLARRAVDDNVLLLDWVKGLLKDKRLETLVDADLWGKYNEEEAEQLIKLALLCTKWSAMERPKMSEVVQMLEGDGLAEKLDQWQKDKMHRQDNQTLLPNDNWSIIDSTSHIPPDELSGPR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0546 611 ProSiteProfiles Leucine-rich repeat profile. 159 181 IPR001611 GO:0005515
Lele13g0546 611 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Lele13g0546 611 ProSiteProfiles Protein kinase domain profile. 288 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0546 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Lele13g0546 611 Pfam Leucine rich repeat 114 170 IPR001611 GO:0005515
Lele13g0546 611 Pfam Leucine Rich Repeat 87 109 IPR001611 GO:0005515
Lele13g0546 611 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0546 611 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Lele13g0546 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Lele13g0546 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Lele13g0546 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 571 - -
Lele13g0546 611 Pfam Protein kinase domain 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0546 611 SUPERFAMILY Protein kinase-like (PK-like) 268 563 IPR011009 -
Lele13g0546 611 Gene3D Ribonuclease Inhibitor 19 200 IPR032675 -
Lele13g0546 611 FunFam Somatic embryogenesis receptor kinase 1 18 204 - -
Lele13g0546 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Lele13g0546 611 SMART LRR_typ_2 85 108 IPR003591 -
Lele13g0546 611 SMART LRR_typ_2 157 182 IPR003591 -
Lele13g0546 611 SMART LRR_typ_2 109 132 IPR003591 -
Lele13g0546 611 SMART LRR_typ_2 133 156 IPR003591 -
Lele13g0546 611 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
Lele13g0546 611 SUPERFAMILY L domain-like 22 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0546 Lele-ChrLele13 17699020 17704163 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0546 8 611 Receptor kinase-like Gene Family AT4G33430 65.099 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele13g0546 Pkinase 7.9e-47 CL0016