Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0542 ATGTATACATGTATACTATATGTTAATTTTAAGATAAAGTATTGCTTGGATTTCAAGGTCTATTATTGGTTATCCTCAATGGCAAGCAAGGAGACAATGATCTGGATATGTGTCGATATTGGGAGACTAATGGAATCTTTTGTCTTGCGTCTCAACAATAACACATTAACTGGAGTCATTCCCATTTCCTTGACTAATGCCTATTCACTGCAAGTCCTTGATCTTTCAAAAAACCTGCTAGAAGGAGACATCCCAACCAGTGGTTCATTTCAATCGTTTGGTCAACTCTGTTTTAACGAAAATCCTCATTTGAAACCACGAAATATTACACCTGGACCAATTTCACCAATGCCTCCGCCATCTCCTTCAGGCAACGGTGCAACTGGACCTATTGCCGCAGGAGTTGGTGCTGCTGCTCTATCTTTTACAGTTATTGCACTTGCATGTTATTACCGGAGAAGGATTCCAATTGCTTACTGCCGTAAAAGAAGACCGCCAGATTATGTCTTTAATGTTTCTGCTGAGGAGGACCTTGAAGCTCACTTTGGTCAGCTTAAAAGGTTTCCCCTGCATGAACTTCAAGTTGCAACAGGCAACTTCAGTAACCAAAACTTTCTGGGTAGAGGTGGGTTTGGTAAGGTTTACAAAGGACGGTTGACTGATGGGTCTCTAGTTGCAGTGAAAAGGCTTAAAGAGGAGGGCACTCGGGGTGAAGAGCTGCAATTTCAAACAGAAGTAATAATGATCAGCTTGGCTGTCCATCGTAATTTGCTCCGGCTGCGTGGTTTTTGCATGACACGAACTGAACGTTTGCTTGTGTATCCTTTCATGGCTAATGGCTGATTAATTTATGTGCATATGGTTTTCCCTCAATTGTCTTCTAATGTCTTAGACCGCCCTAAATCAAAACCCCCGCTTGAATGGCCTGTACGAAAGCGAATTGCATTGGAAGCTGCTAGGGGGCTTGCTTATTTACATGATGATTGCAGTCCAAAGATCATTCACCGTGGTGTTAAAGCCACAAATATATTGTTGGATGAAGAGTGTGAAGCAGTTGTTGGGGACTTTGGCTTGGCAAAACTTATGCAGTACGAAGATACTCATGTTACCACAGTTGTGCGTGGTAGAATTGGGTACATTGCCCCAGAATACCTCTCAAGTGGAAAGTCTTCAGAGAAGACTGATGTTTATGGTTATGGTGTAATGCTTCTTCAACTAATTACTGGACAGAGGGCTTTTGATCTTGCACGACGTGCCGTTGATGATAATGTCATGTTAATTGATTGGGTTAGAGGGCTTTGGAAAGACAAGAGATTGGAAACACTAGTGGATGCTGATTTGGGGAGTAAATATAATGAAGAGGAGGCGGAGCAATTAATCCAAGTGGCCTTGCTCTGCACACAAAGCTCAGCTATGGAAAGACCAAAGATGTCTGATGTGGTAAGGATGCTTGGAGGTTGGAGGATACATACCTCTGATACACTTGCTGCATGGATGGTCGAGATTTGGGAGATGCATTCAAGCATGCTAATGCTATTGTCACCAAAAGTGTCATCTCCCGCATCTCTCTATTCTGGAAGCAATAGTGCTAGTGGAGCTATCGCCAGAGGAGTTGCTGCTGCTGCTGCTGCCGCCCTGATGCTTGCAGCCCCTGCAATTGCACTCGCTTATTGCCGGAAGAGGAGACCACAAGATTATTTCTTTGATGTCCCTGCTGAGGACGACCCTGAAGTTCATCTTGGTCAGCTTAAAAAGCTCCCCTTTCGTGAGCTACAAGTTGCAACCGACAACTTTCGTAACTGTGGTAGAGGTGGATTTGGTAAGGTTTACAAAGGACGGTTAACTGATGGGTCTCTAGTTGCAGTGAAAAGACTTGAAGAGGAACGCACTCAAGGTGGAGAGCTAAAATTTCAAACAGAAGTAGAAATGATAAGCATGGTTGTCCATCGTAATTTGCTGCGGCTGCGTCGCTTTTGCATGACACCAACTGAACGGTTGCTTGTGTATCCTTTACATAGCTAA 2022 0.4367 MYTCILYVNFKIKYCLDFKVYYWLSSMASKETMIWICVDIGRLMESFVLRLNNNTLTGVIPISLTNAYSLQVLDLSKNLLEGDIPTSGSFQSFGQLCFNENPHLKPRNITPGPISPMPPPSPSGNGATGPIAAGVGAAALSFTVIALACYYRRRIPIAYCRKRRPPDYVFNVSAEEDLEAHFGQLKRFPLHELQVATGNFSNQNFLGRGGFGKVYKGRLTDGSLVAVKRLKEEGTRGEELQFQTEVIMISLAVHRNLLRLRGFCMTRTERLLVYPFMANGXLIYVHMVFPQLSSNVLDRPKSKPPLEWPVRKRIALEAARGLAYLHDDCSPKIIHRGVKATNILLDEECEAVVGDFGLAKLMQYEDTHVTTVVRGRIGYIAPEYLSSGKSSEKTDVYGYGVMLLQLITGQRAFDLARRAVDDNVMLIDWVRGLWKDKRLETLVDADLGSKYNEEEAEQLIQVALLCTQSSAMERPKMSDVVRMLGGWRIHTSDTLAAWMVEIWEMHSSMLMLLSPKVSSPASLYSGSNSASGAIARGVAAAAAAALMLAAPAIALAYCRKRRPQDYFFDVPAEDDPEVHLGQLKKLPFRELQVATDNFRNCGRGGFGKVYKGRLTDGSLVAVKRLEEERTQGGELKFQTEVEMISMVVHRNLLRLRRFCMTPTERLLVYPLHS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0542 673 SUPERFAMILY Protein kinase-like (PK-like) 181 484 IPR011009 -
Lele13g0542 673 Pfam Protein kinase domain 202 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0542 673 Pfam Protein kinase domain 598 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0542 673 FunFam Somatic embryogenesis receptor kinase 1 567 671 - -
Lele13g0542 673 FunFam Somatic embryogenesis receptor-like kinase 1 287 499 - -
Lele13g0542 673 Gene3D Ribonuclease Inhibitor 35 111 IPR032675 -
Lele13g0542 673 ProSiteProfiles Protein kinase domain profile. 595 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0542 673 SUPERFAMILY L domain-like 41 105 - -
Lele13g0542 673 Gene3D Phosphorylase Kinase; domain 1 567 670 - -
Lele13g0542 673 Gene3D Phosphorylase Kinase; domain 1 169 276 - -
Lele13g0542 673 Gene3D Transferase(Phosphotransferase) domain 1 291 494 - -
Lele13g0542 673 ProSiteProfiles Protein kinase domain profile. 200 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0542 673 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 40 489 - -
Lele13g0542 673 FunFam Somatic embryogenesis receptor kinase 1 169 276 - -
Lele13g0542 673 ProSitePatterns Protein kinases ATP-binding region signature. 206 228 IPR017441 GO:0005524
Lele13g0542 673 SUPERFAMILY Protein kinase-like (PK-like) 584 671 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0542 Lele-ChrLele13 17663043 17674638 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0542 546 670 Receptor kinase-like Gene Family AT4G33430 79.688 9.67e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele13g0542 Pkinase 1.1e-38 CL0016