Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0539 ATGGGTACCATTCCAATTCAGATAGGAGTTCTTAAAAAACTTATCTATTTGGACTTGTCTCACAACAATCTTATTGGTACCATTCCAATTCAAATAGCAGCTCTTCCAAATCTCATGTACTGGAACTTTTCTCATAATAATCTTACTGCCGCTGCCATGATAGCAGAGCAGAAACGTGCTCTCCTTCATACAAAATGGTGGAATATTAGCAACACTGCGTACAACTTCTCAAACCCTTGTGAATGGACAGGGATACAATGCAATGAAATTGGAAGAGTTATTAAAATGAGTCCACTAAGGATCACTTCACAACACCCTCGTCTAGCAAATCTCAACCTCACCGCATTTCCCCATCTAACAAGTCTCATACTTTCTAAAATGAGTTTGATAGGTACGATTCCAACTCAAATAAGAATTCTTCAGAGTCTCACTTATTTGGACTTATCTCATAACCACCTTACTGGTGATATCCCTCCTTCTATTTTCAATTTGACAAATTTACAACACTTTGATGTTTCTCAAAATCATTTAACTGGAAGCATGCCAGAAGAGATTGGACATCTTCATTATTTGTATTATACAAACATCTCCCAAAATAATCTGAGTGGAAATGTGCCCTTCGTTGTGAACTCTTATTTTCAATTTCATGGTGACTTTAGTCACAACAAATTCAATGGAACATTATCATCTGACATATGCAGTAACCTTTCACAATGTAACATTGATTTGAGCTACAATAGTATCTCTGGAAGTATACCTAGAGAACTTGAGCTTGCATACACTCTAGTTGTGACTGAAAAGTGCGATGTTTATAGTTTTGGAGTGGTGACACTAGAAACAATGATGGGAAGACATCCTGGAGATTTGATATTGTCTCTGTCAAAGACCTATACTGAAAGCATTTTGCTAAAAGATGTCTTAGATGCACGTCTTTCATTGCCAGAATGGAGAGATGCAGGAGATGTGACACTTTTGGTGACAATAGCATTAGCATGCTTGAATCCATCTCCCAAATCTCGACCATCAATGCAACAAGTGTCCCAAAGGCTTTTATCCTCCAACCTGCCATTAGCCATTCCTTTCAATAATATCTCACTCCAGCATCTTGTCAATCAAGATATGCAAATAAGCTAA 1134 0.3748 MGTIPIQIGVLKKLIYLDLSHNNLIGTIPIQIAALPNLMYWNFSHNNLTAAAMIAEQKRALLHTKWWNISNTAYNFSNPCEWTGIQCNEIGRVIKMSPLRITSQHPRLANLNLTAFPHLTSLILSKMSLIGTIPTQIRILQSLTYLDLSHNHLTGDIPPSIFNLTNLQHFDVSQNHLTGSMPEEIGHLHYLYYTNISQNNLSGNVPFVVNSYFQFHGDFSHNKFNGTLSSDICSNLSQCNIDLSYNSISGSIPRELELAYTLVVTEKCDVYSFGVVTLETMMGRHPGDLILSLSKTYTESILLKDVLDARLSLPEWRDAGDVTLLVTIALACLNPSPKSRPSMQQVSQRLLSSNLPLAIPFNNISLQHLVNQDMQIS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0539 377 Gene3D Ribonuclease Inhibitor 55 217 IPR032675 -
Lele13g0539 377 Gene3D Transferase(Phosphotransferase) domain 1 218 358 - -
Lele13g0539 377 Pfam Protein tyrosine and serine/threonine kinase 257 350 IPR001245 GO:0004672|GO:0006468
Lele13g0539 377 FunFam Nuclear pore complex protein NUP107 52 207 - -
Lele13g0539 377 ProSiteProfiles Leucine-rich repeat profile. 142 164 IPR001611 GO:0005515
Lele13g0539 377 PANTHER LEUCINE RICH REPEAT KINASE 2 2 256 - -
Lele13g0539 377 Pfam Leucine Rich Repeat 13 29 IPR001611 GO:0005515
Lele13g0539 377 Gene3D Ribonuclease Inhibitor 1 54 IPR032675 -
Lele13g0539 377 SUPERFAMILY L domain-like 59 262 - -
Lele13g0539 377 Pfam Leucine Rich repeats (2 copies) 141 177 IPR025875 -
Lele13g0539 377 SUPERFAMILY Protein kinase-like (PK-like) 257 358 IPR011009 -
Lele13g0539 377 PRINTS Leucine-rich repeat signature 14 27 - -
Lele13g0539 377 PRINTS Leucine-rich repeat signature 140 153 - -
Lele13g0539 377 SUPERFAMILY L domain-like 2 50 - -
Lele13g0539 377 SMART LRR_typ_2 11 35 IPR003591 -
Lele13g0539 377 SMART LRR_typ_2 140 164 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0539 Lele-ChrLele13 17590039 17594723 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0539 1 286 Receptor kinase-like Gene Family AT5G56040 30.195 1.24e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele13g0539 PK_Tyr_Ser-Thr 3e-05 CL0016