Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0531 ATGTCCTTGACTAATGCCTATTCACTGCAAGTCCTTGATCTTTCAAAAAACCTGCTAGAAGGAGACATCCCAACCAGTGGTTCATTTCAATCGTTTACTCAACACAGTTTTAACGAAAATCCTCATTTGAAACCACTAAATATTACACCTGGACCAATTTCACCAACGCCTCCGCCATCTCCTTCAGGCAACGGTGCAACTGGACCTATTGCTGTAGGAGTTGGTGCTGCTGCTCTATCTTTTACAGTTATTGCACTTGCATGCTATTACCGGAGAAGGATTCCAATTGCTTACTGCTGTAAAAGAAGACCGCCAGATTATGTCATTCATGTTTCTGCTGAGGAAGACCTTGAAGCTCACTTTGGTCAGCTTAAAAAGTTTCCCCTGCATGAACTTCAAGTTGCAACAGGCAACTTCAGTAACCAAAACTTTTTGGGTAGAGGTGGGTTTGGTAAGGTCTACAAAGGACGGTTTACTGATGGGTCTTTAGTTGCAGTGAAAAGGCTTAAAGAGGAGGGCACTCAGGGTAAAGAGCTGCAATTTCAAACAGAAGTAATAATGATCAGCTTGGCTGTCCATCGTAATTTGCTCCGGCTGCGTGGTTTTTGCATGACACGAACTGAACGTTTGCTTGTGTATCCTTTCATGGCTAATGGCTACCGCCCTAAATCAAAACCCCCTCTTGAATGGCCTTACGAAGATACTCATGATACCACAGTTGTGCGTGGTGCAATTGGGTACATTGCCCCAGAATACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTATGGTTATGGTGTTAGAGGGCTTTGGAAAGACAAGAGATTGAAAATACTAGTGGATGCTGATTTGGGGAGTAAATATAATGAAGAGGAGGCGGAGCAACTAATCCAAGTGGCCTTGCTCTGCACACAAAGCTCAGCTATGGAAAGACCAAAGATGTCTGATGTGATAAGGATGCTTGGAGGTGATGGCTTGACTGAAAAATGGGATCAATGGCAGAAAGATGAGATTTACAGGCCAAATAATCAAACCCTTCTCCGTAATATCAATTGGTCGATTGTGGACTCAGCTTTACATATTCCCCAGGATGAACTCTCAGGTCCCAGATGA 1119 0.4352 MSLTNAYSLQVLDLSKNLLEGDIPTSGSFQSFTQHSFNENPHLKPLNITPGPISPTPPPSPSGNGATGPIAVGVGAAALSFTVIALACYYRRRIPIAYCCKRRPPDYVIHVSAEEDLEAHFGQLKKFPLHELQVATGNFSNQNFLGRGGFGKVYKGRFTDGSLVAVKRLKEEGTQGKELQFQTEVIMISLAVHRNLLRLRGFCMTRTERLLVYPFMANGYRPKSKPPLEWPYEDTHDTTVVRGAIGYIAPEYLSTGKSSEKTDVYGYGVRGLWKDKRLKILVDADLGSKYNEEEAEQLIQVALLCTQSSAMERPKMSDVIRMLGGDGLTEKWDQWQKDEIYRPNNQTLLRNINWSIVDSALHIPQDELSGPR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0531 372 Gene3D Phosphorylase Kinase; domain 1 108 215 - -
Lele13g0531 372 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Lele13g0531 372 MobiDBLite consensus disorder prediction 48 64 - -
Lele13g0531 372 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 333 - -
Lele13g0531 372 MobiDBLite consensus disorder prediction 40 65 - -
Lele13g0531 372 SUPERFAMILY Protein kinase-like (PK-like) 120 324 IPR011009 -
Lele13g0531 372 Pfam Protein tyrosine and serine/threonine kinase 142 219 IPR001245 GO:0004672|GO:0006468
Lele13g0531 372 ProSiteProfiles Protein kinase domain profile. 139 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0531 372 Gene3D Transferase(Phosphotransferase) domain 1 216 343 - -
Lele13g0531 372 Gene3D Ribonuclease Inhibitor 1 52 IPR032675 -
Lele13g0531 372 FunFam Somatic embryogenesis receptor kinase 1 108 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0531 Lele-ChrLele13 17522075 17524902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0531 2 372 Receptor kinase-like Gene Family AT4G33430 50.321 2.40e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele13g0531 PK_Tyr_Ser-Thr 7.7e-11 CL0016