Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0517 ATGAGCACGTGTGGAATTGGGTGTACGACAATAAGTATAGAGATAGAATCCAATGGCGACGGGCCTAATTCGGTGATCACGCTGTGGAATTTCTTCCTCTTTGAAGTTAGTTGTACTTCATGCTTCAGCTTCTCCACTAGGTTTTACGCGATTCCCCGACGAAAAGAGAAGAGGTTTCCTTTAGTGGATCATTGCACCACGGGTATAGTTCTGTACATCTTTTACGCGATTTCAATTTCCTTTCCTTTTGCGGGAGATTGGTATATTGTTATTTTTGCGTTTCTGTTCCAATTGGATTTTATTCTTTTGGTGGACATGGTTTACTGTGTGACCTTTTGCATAAAAAAAAATCAATTAGAAGGTAAAGACTTTGATGGGTTTTATTTAAGTTGTGCACGAAATTCGTGGGTTATTGATTTAGCTTGGGTTGGCTCCAAAAGTCAGAATGTGGAGGTGAAGGTGCTGAATTTTTACTTCCTATGTTTTGCTATTCAATCTGATACTTTTGGAGCTTCCCTGCATCTTAGCTATCATAATCTGCGGTACCTGAAGTTCCAGTTTGAAATGTCAGAAGTGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAACTGAAGGATGCATTTGAGAAGTTCGGCAAACTTATTGAGGCTAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAAGGATCTACTAGAGATGATGGTGATCGTTACCGTGAAAGGGGTCGCGATCGTGACCGAGATTATAGAGGTGGTCGAAGCTCCAATGGTGGTGAATGTTTTAAATGTGGTAAGCCTGGTCATTTTGCCAGGGAGTGCCCTAGTGAAGGAGCAGGAGGGGGCAGGTCTGGTGGCAGGGAAAGTAGATATGGTGGTAGGAGTGGTGGTGGTGGTGGTCACTATGGTCCTGATAGGAATGCGGATCGTTATTCTGGTGGGCGCAACAGGGACTCAGGTAGTCATGGAGATTCTGGAAGCGATCGGTACCCTCGTGATCGTGCTGGACCTTATGATCGTCGAGGATCAGGAGGCTTCCATTCTGGATAA 1185 0.4397 MSTCGIGCTTISIEIESNGDGPNSVITLWNFFLFEVSCTSCFSFSTRFYAIPRRKEKRFPLVDHCTTGIVLYIFYAISISFPFAGDWYIVIFAFLFQLDFILLVDMVYCVTFCIKKNQLEGKDFDGFYLSCARNSWVIDLAWVGSKSQNVEVKVLNFYFLCFAIQSDTFGASLHLSYHNLRYLKFQFEMSEVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEAMNGMDLDGRTITVDKAQPQGSTRDDGDRYRERGRDRDRDYRGGRSSNGGECFKCGKPGHFARECPSEGAGGGRSGGRESRYGGRSGGGGGHYGPDRNADRYSGGRNRDSGSHGDSGSDRYPRDRAGPYDRRGSGGFHSG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0517 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 267 IPR000504 GO:0003723
Lele13g0517 394 Gene3D - 297 347 - -
Lele13g0517 394 Gene3D - 184 291 IPR012677 -
Lele13g0517 394 MobiDBLite consensus disorder prediction 275 299 - -
Lele13g0517 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Lele13g0517 394 SUPERFAMILY RNA-binding domain, RBD 187 303 IPR035979 GO:0003676
Lele13g0517 394 SMART c2hcfinal6 305 321 IPR001878 GO:0003676|GO:0008270
Lele13g0517 394 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 189 390 - -
Lele13g0517 394 MobiDBLite consensus disorder prediction 264 394 - -
Lele13g0517 394 SUPERFAMILY Retrovirus zinc finger-like domains 299 322 IPR036875 GO:0003676|GO:0008270
Lele13g0517 394 SMART rrm1_1 196 269 IPR000504 GO:0003723
Lele13g0517 394 MobiDBLite consensus disorder prediction 353 385 - -
Lele13g0517 394 Pfam Zinc knuckle 305 321 IPR001878 GO:0003676|GO:0008270
Lele13g0517 394 ProSiteProfiles Zinc finger CCHC-type profile. 306 321 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0517 Lele-ChrLele13 17358034 17361133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0517 197 289 Eukaryotic Initiation Factors Gene Family AT1G71770 34.409 5.27e-08 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0517 13 17358034 17361133 Lele15g1956 15 12290563 12292838 hybridization
Lele13g0517 13 17358034 17361133 Lele16g1979 16 12101869 12110212 hybridization