Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0480 ATGGATTCAAGATACAGGTATTGGCAGAATGTGATGGTGCTTCTGGTGGCGTATTCGGCATGGGTTTACCCATTTGAAGTTGCTTTTCTGCACAGCTCTCCAAATAAGGAAGTGTTTATAGTGGATAATGTTGTTGATCTTTTCTTTGCTGTTGACATTGTTCTCACATTCTTCGTAGCTTTCATTGATCGAAGAACTCAACTATTAGTAAGAGACTTGAGAAAGATTGCCATGAGGTACTTGTCAACTTGGTTCTTGATGGATGTAGCATCAACTATTCCATATGAGGCAATAAGTTATGTAATCACAGGAAAGCACAAGGTAGGTCTTGTTTGCTACCTTCTGGGCATGCTTAGATTTTGGCGACTCAGAAGAATGAAGCAACTTTTTACCAGGCTAGAGAAAGACATTAGATTCAGCTACTTCTGGGTCAGATGTGCAAGACTTCTCTTTGTAACACTATTTTCAGTTCATTGAACTCGCCATACTATGGAGTTTAGAAATAGCATTGAAGCTGCATCAAGTTTTGTGGGGCGAAATCGTTTGCCTGCGAGGTTGAAAGAGCAGATTCTGGCCTATATGTGTTTGAGATTTAAGGCAGAAAGCTTAAATCAATATCAGCTTATTGAACAACTACCAAAGTCCATTTGCACAAGCATCTGCCAGCATTTGTTTTTGCCAACGTTGGAGAAAGTCTATCTTTTCAAACATGTCTCTAGAGAAGTTCTCTTATCCTTGGTTGCGAAAATGAAGGCAGAGTATCTACCACCTAGAGAGGATGTTATTATGCAAAATGAAGCACCTGATGATGTTTACATCATAGTTTCAGGAGAAGTAGAGATCATTGATTGTGTAATGGAGAAAGAGAAACTTTTATGGACTTTACTAGCAGGGGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAAACCTCAATACTTTACCTATAGAACTAAAACTCTCACACAGCTCTTGAGGCTCAAAACCAATGCTCTAATAGAAGCAATGCAAAGTAAAAAGGAAGACAATATACAAATACTCAAAAATTTCCTTCAGCACTTCAAGCAACTAAAAGATCTCAATATTAGAGATTTAATGGTAGATAGTGGAGAAGAAGAGGATCCAAACATGGCTGTGAATTTATTAACTGTCGCCAGTACAGGCAATGCTGCTTTTCTTGAAGAGCTTCTCAAGGCAGGTTTGGATCCTGACGTGGGAGACTCAAAAGGGAAAACCCCATTGCACATAGCTGCATCAAATGGGCATGAAGAGTGTGTAAAAGTCTTGCTCAGGCACGCATGCAACATACATGTAAGAGACATGAATGGTAACACTGCCTTATGGGACGCCATAGCATCAAAGCATCATACCATATTCAGAATCCTCTACCAACTTGCATGCCTCTCTGATTCACAAACAGGAGGTGATCTCCTGTGTACAGCAGCAAAAAGAAATAATCTAACAGTGATGATGGAGCTTTTGAAACAAGGACTGAACGTAGACTCAAAAGATCACCATGGCATAACAGCAACCCAAGTAGCCATGGCAGAGAATCATGTGGAAATGGTTCAGCTGCTTGTCATGAATGGAGCAGATGTTTCTGACATACAAACCCATATTTCTGCTTCTGCTTTGAACGGAATGCTGCGAAAGCGCGAGATCGGGCATCGGATCACAGTACATGAGGCGACACCCAGTGAGAATGTAGTAAGGGAAGATGAAGGTGAGGAGGAGGAGCAGAGTTGGGGAAGATATAGTAAATCAAGCTTCCCAAGAGTGAGTATATATAGAGGCCACCCAATAAAAAGAAGAGACAAAAGTTGCAACGAACCTGGGAGGCTCATAAGGTATCCTGATTCACTTGAGGAGCTCAAGAGAATTGCTGGTGACAACCAAGGATATTCATCGAGGTGTGATTTTGAAGCATTGTTGGCCTCCTAA 1941 0.4111 MDSRYRYWQNVMVLLVAYSAWVYPFEVAFLHSSPNKEVFIVDNVVDLFFAVDIVLTFFVAFIDRRTQLLVRDLRKIAMRYLSTWFLMDVASTIPYEAISYVITGKHKVGLVCYLLGMLRFWRLRRMKQLFTRLEKDIRFSYFWVRCARLLFVTLFSVHXTRHTMEFRNSIEAASSFVGRNRLPARLKEQILAYMCLRFKAESLNQYQLIEQLPKSICTSICQHLFLPTLEKVYLFKHVSREVLLSLVAKMKAEYLPPREDVIMQNEAPDDVYIIVSGEVEIIDCVMEKEKLLWTLLAGDMFGEVGALCCKPQYFTYRTKTLTQLLRLKTNALIEAMQSKKEDNIQILKNFLQHFKQLKDLNIRDLMVDSGEEEDPNMAVNLLTVASTGNAAFLEELLKAGLDPDVGDSKGKTPLHIAASNGHEECVKVLLRHACNIHVRDMNGNTALWDAIASKHHTIFRILYQLACLSDSQTGGDLLCTAAKRNNLTVMMELLKQGLNVDSKDHHGITATQVAMAENHVEMVQLLVMNGADVSDIQTHISASALNGMLRKREIGHRITVHEATPSENVVREDEGEEEEQSWGRYSKSSFPRVSIYRGHPIKRRDKSCNEPGRLIRYPDSLEELKRIAGDNQGYSSRCDFEALLAS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0480 646 SUPERFAMILY cAMP-binding domain-like 162 352 IPR018490 -
Lele13g0480 646 SMART ANK_2a 506 535 IPR002110 GO:0005515
Lele13g0480 646 SMART ANK_2a 473 502 IPR002110 GO:0005515
Lele13g0480 646 SMART ANK_2a 327 362 IPR002110 GO:0005515
Lele13g0480 646 SMART ANK_2a 376 405 IPR002110 GO:0005515
Lele13g0480 646 SMART ANK_2a 442 471 IPR002110 GO:0005515
Lele13g0480 646 SMART ANK_2a 409 438 IPR002110 GO:0005515
Lele13g0480 646 SUPERFAMILY Voltage-gated potassium channels 2 158 - -
Lele13g0480 646 Gene3D - 468 546 IPR036770 -
Lele13g0480 646 ProSiteProfiles Ankyrin repeat profile. 473 505 IPR002110 GO:0005515
Lele13g0480 646 CDD CAP_ED 234 347 IPR000595 -
Lele13g0480 646 ProSiteProfiles Ankyrin repeat profile. 409 441 IPR002110 GO:0005515
Lele13g0480 646 PANTHER POTASSIUM CHANNEL AKT1 157 632 IPR045319 GO:0005249|GO:0006813
Lele13g0480 646 SMART cnmp_10 234 351 IPR000595 -
Lele13g0480 646 Pfam Ion transport protein 6 158 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele13g0480 646 Pfam Ankyrin repeats (3 copies) 385 463 IPR002110 GO:0005515
Lele13g0480 646 SUPERFAMILY Ankyrin repeat 342 534 IPR036770 -
Lele13g0480 646 Gene3D Jelly Rolls 201 375 IPR014710 -
Lele13g0480 646 Pfam Cyclic nucleotide-binding domain 254 338 IPR000595 -
Lele13g0480 646 ProSiteProfiles Ankyrin repeat region circular profile. 409 440 - -
Lele13g0480 646 FunFam Potassium channel KAT2 222 358 - -
Lele13g0480 646 ProSiteProfiles cAMP/cGMP binding motif profile. 234 353 IPR000595 -
Lele13g0480 646 Gene3D - 6 177 - -
Lele13g0480 646 ProSiteProfiles Ankyrin repeat region circular profile. 506 534 - -
Lele13g0480 646 Gene3D - 378 465 IPR036770 -
Lele13g0480 646 ProSiteProfiles Ankyrin repeat profile. 506 538 IPR002110 GO:0005515
Lele13g0480 646 PRINTS Ankyrin repeat signature 410 425 IPR002110 GO:0005515
Lele13g0480 646 PRINTS Ankyrin repeat signature 522 536 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0480 Lele-ChrLele13 17063242 17072183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0480 157 414 Ion Channels AT4G22200 72.519 1.31e-125 382
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0480 13 17063242 17072183 Lele13g0480 13 17063242 17072183 ECH