Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0440 ATGCAGTTCTCTCATAGCGGGTTGGGATCTCTTTTTCCTGTTTTGAATTTCATCTCTGTAAGCGCTGACAAAAGGTGGGTTTTAATCCAACAATGGCGATTTGATCATCTTGTATTCCTCAAGTCTCTAGAGTTAGATGCTAGTGGGAAAATGTCATTCCGGAGTATAGTTCGTGATTTGAGAGATAGCTTAGGGAGCTTATCTAGACGGAGTTTTGATGTGCAGCTGACTGGCCATCACAGAGGAAAATCTCATGGGGCTATACATGATCAGCCAGAAGTAATTGAAAATAGTTGCTGGGCTAGCTTGCCCCCAGAATTGTTGTATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTATGCCAGTCTTGGAGGACTATGTGCAAAGAAATTGTTAAGAGTCCAGAGTTTAGTGGAAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCAGGATCACGAGACGGAACCATTCAATGTTTCATCAAAAGAGATAAATCTAATTTATCATATCGCCTTTTCCTTTGTCTCAGCCCTACTTTGTTAGTTGAAAATGGGAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAGCAACTTACACAGAGTATATTATTTCCATGGATGCCGGCAATATCTCTAGATCGAGTAGCTCTTACATTGGAAAGCTGAGATCAAACTTGCTGGGTACGAAATTTATAATATACGATACACAGCCTCCATGCAATTCTGCCCATATACTGCCTCCAGGGAGGACAAGCCGAAGGTTTTATTCGAAAAAGGTTTCACCAAAGGTCCCATCTGGGAGTTACAAAATAGCTCAAGTAACATATGAATTAAATGTGCTTGGGACACGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAGCGTTAGCACTTGACGTTGGTGGCGCAGTCCCTGGACAACCCGAGCTTCTTCCTTGCCCCCTGGATGACTCATTCCGGAGCATCTCCTTTTCAAAATCCTTAGACCGCTCTATCGAGTTCAGCAGCTCAAGATTTTCCGAGTTCAGGGAAGGCTGCAACGAGGACGAGGACGGCAACCTGAGGCCATTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAATGCTGGTGCCTTAACTTCCGAGGCCGGGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTGCCCAGCCAGCAGCCAGTGCTTCTACACCGTCTCAGCCAGCGGCGTCCGAGCAAGATAAGATAATCTTGCAGTTTGGTAAAGTTGGGAAAGATATGTTTACCATGGATTATTGTTATCCTCTATCGGCATTCCAGGCTTTCGCGATATGCTTGAGTAGCTTCGACACCAAATTGGCTTGTGAATAA 1419 0.4447 MQFSHSGLGSLFPVLNFISVSADKRWVLIQQWRFDHLVFLKSLELDASGKMSFRSIVRDLRDSLGSLSRRSFDVQLTGHHRGKSHGAIHDQPEVIENSCWASLPPELLYDIIRRLEESESTWPARKHVVACAAVCQSWRTMCKEIVKSPEFSGKLTFPVSLKQPGSRDGTIQCFIKRDKSNLSYRLFLCLSPTLLVENGKFLLSAKRTRRATYTEYIISMDAGNISRSSSSYIGKLRSNLLGTKFIIYDTQPPCNSAHILPPGRTSRRFYSKKVSPKVPSGSYKIAQVTYELNVLGTRGPRKMHCIMHSIPALALDVGGAVPGQPELLPCPLDDSFRSISFSKSLDRSIEFSSSRFSEFREGCNEDEDGNLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAASASTPSQPAASEQDKIILQFGKVGKDMFTMDYCYPLSAFQAFAICLSSFDTKLACE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0440 472 FunFam Tubby-like F-box protein 95 148 - -
Lele13g0440 472 PANTHER TUBBY-RELATED 84 470 - -
Lele13g0440 472 ProSitePatterns Tub family signature 2. 457 472 IPR018066 -
Lele13g0440 472 SUPERFAMILY Tubby C-terminal domain-like 149 472 IPR025659 -
Lele13g0440 472 ProSitePatterns Tub family signature 1. 394 407 IPR018066 -
Lele13g0440 472 Gene3D - 93 148 - -
Lele13g0440 472 PRINTS Tubby superfamily signature 376 393 IPR000007 -
Lele13g0440 472 PRINTS Tubby superfamily signature 232 256 IPR000007 -
Lele13g0440 472 PRINTS Tubby superfamily signature 282 309 IPR000007 -
Lele13g0440 472 PRINTS Tubby superfamily signature 394 410 IPR000007 -
Lele13g0440 472 PRINTS Tubby superfamily signature 216 232 IPR000007 -
Lele13g0440 472 PRINTS Tubby superfamily signature 450 472 IPR000007 -
Lele13g0440 472 PRINTS Tubby superfamily signature 429 448 IPR000007 -
Lele13g0440 472 Pfam F-box domain 100 146 IPR001810 GO:0005515
Lele13g0440 472 Gene3D Tubby Protein; Chain A 159 466 IPR025659 -
Lele13g0440 472 Pfam Tub family 161 467 IPR000007 -
Lele13g0440 472 SUPERFAMILY F-box domain 94 144 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0440 Lele-ChrLele13 16666322 16672405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0440 51 472 TUB Transcription Factor Family AT1G76900 67.320 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele13g0440 Tub 2.4e-113 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0440 13 16666322 16672405 Lele13g0440 13 16666322 16672405 ECH