Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0417 ATGGCGTCTGCTAGCCTTGGAAATGGTGGGGCCAGCAGTTCAAGGTCTGTTAATGGATTCAGAGGTTCATCTAGTTCAGTGGATTGGCTCGGGCAAGAGATGCTTGAATTGAGGTTGAGGGACAAGAGTGACAATGATGACGACAGAGAAAGTGAGCCTGACATCATTGATGGTGTTGGTGCCGAGACAGGACGTGAGATAAGAACTAGCATTGGTGGTCGAAATGGTCAATCTAAGCAGAATGTCAGCTACATTGCAGAACATGTGGTTGGAACAGGCTCTTTTGGTGTTGTCTATCAGGCAAAATGTAGAGAAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAACAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTTAGGCATTGCTTCTTTTCAACAACTGACAAAGAAGAGCTTTACTTGAATCTTGTGCTTGAATATGTTCCTGAAACTGTTAACCGTATTGCAAGGAACTATAGCAGGATGAATCAGCGAATGCCTTTAATAAATGTCAAACTATATACCTACCAGATTTGCCGGGCCCTTGCTTATATACATAACTGTATTGGAATATGTCATCGTGACATTAAACCTCAGAATTTACTAGTGAATCCACACACACAACAACTAAAACTTTGTGATTTTGGAAGCGCAAAAGTGTTGGTGAAAGGAGAACCAAATGTTTCATATATCTGTTCAAGATATTACCGTGCTCCAGAGCTTATATTTGGTGCCACTGAGTATACAACTGCCATAGATATATGGTCAACTGGTTGTGTGATGGCTGAACTACTTCTTGGACAGCCTTTATTTCCCGGAGAAAGCGGAGTTGATCAACTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACCCGGGAAGAGATAAAATGCATGAACCCAAATTATACTGAATTCAAGTTTCCACAGATCAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTTGATCTTGTATGCAGATTCTTTCAATATTCTCCCAATTTACGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTAAGGGATCCAAACACCCGCCTTCCTAATGGCCGCCCACTTCCTCCTTTGTTTAATTTTAAATCTCAGGAGCTCGCTGGTATACCGCCTGATGTCGTCAATCGGCTTATTCCGGAGCATGCTCGCTGTAAATCATGA 1248 0.4239 MASASLGNGGASSSRSVNGFRGSSSSVDWLGQEMLELRLRDKSDNDDDRESEPDIIDGVGAETGREIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVYQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRMNQRMPLINVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTQQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKSQELAGIPPDVVNRLIPEHARCKS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0417 415 MobiDBLite consensus disorder prediction 40 61 - -
Lele13g0417 415 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0417 415 Pfam Protein kinase domain 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0417 415 Gene3D Phosphorylase Kinase; domain 1 70 163 - -
Lele13g0417 415 MobiDBLite consensus disorder prediction 1 23 - -
Lele13g0417 415 SUPERFAMILY Protein kinase-like (PK-like) 83 394 IPR011009 -
Lele13g0417 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lele13g0417 415 FunFam Shaggy-related protein kinase kappa 164 412 - -
Lele13g0417 415 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 50 412 - -
Lele13g0417 415 MobiDBLite consensus disorder prediction 40 62 - -
Lele13g0417 415 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Lele13g0417 415 CDD STKc_GSK3 79 371 IPR039192 -
Lele13g0417 415 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0417 415 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
Lele13g0417 415 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0417 Lele-ChrLele13 16422387 16427618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0417 90 371 Core Cell Cycle Gene Families AT1G76540 35.862 1.78e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele13g0417 Pkinase 2.4e-65 CL0016