Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0410 ATGGACCCGCACAGCCCCATCCATTTCTACAGAATCATCTTGAAAAGCAACCTTGAAACCATTATGATTCCAAGCAAATTTACAGGGAGATATGGAAGGTGTTTGTCCAACCCAGTGTTTTTGAAGGCTCCTGATGCTAAAGAATGGAAAGTTTATTGGACAAAACGTGATAATGAGTTCTGGTTTCAAAAGGGATGGAAGGAATTTGTTAACTTTTACTCTCTAGGTGAAGGTTATTTGGTTTTGTTCAAATATGAAGGAACTTCTCAGCTTGTTGTACACATAATTGACAAGAGTTCCCTAGAAATAGAGTATCCTTCGTCTATGGATACCTCTAGTCAAGAGGACAACCTTGATAACCTCAGTGTTGATATAATTGAAAACTTGAAGGACGCCTCTCAAGAGAACAACCTTGATAATCTTAGTGATGATGTAATTGAAATCTCGGATGAGATGCCTCCGAGCCCTAAGGCTAGTCACAATACGCCCTTGTCAACTTCTAGGCCTCCTAAGAAAATGAAAAGTACTACAGATGAAGATGTTGAAATGAGAAGCTTCGATCTGCAGAATATGCCGGTGGGCAAGAAAACCAAGGACAGGCAATTTCAAGGAAAAAAATTTCAGAAATCAACCAACGCTGACTTGAAATTTTCTGAGGAGAAATCTGAAGACACAGGAACAAGAATTTTTAGCAAGAGTAAATGTCTGAATTATGAGCAGAGAAGGAAGAAAGGATTAACTGATGTGGAAAAGAATAAAGCTTTGGAGAGTGCCCGTTCTTTCAAATCCGACAATCCCTTTTTCATCATGGTCTTGCGGCCTTCATATGTCAGTTCTAATTCTTCCTTGCCAATGCCAAAAGAATTTGCTGGAAAACATTTTAAGGAAGAGTGTGGAGTTGTGCAACTTCAGACCTTGGATGGGAGAATTTGGCATGCTAAGTATAAGTTTCCCAAAATTGGAGAAGGCTGGAGGAAGTTTGTGAAGGAAAATGATTTGAAAGTGGGGCATGTTTGTGTATTTGAAATGATTGATCGCTCATTCAAAGTGCATATTTTTAGAGATCGTGAAAAAGTTGCAGGAAATCTGAAAGTAAACTCTTCTAAAATGGAGCAGAAAAGCAGTATGCAAGATCCACCTCTTGAAAAGGCTACCTCTTCCCAATCTGAAAATCCTCATTTTATGCGTGGTTTCATTACTTTTCTAATTATTGTTTTCTACTTTCTTTGGCAGAATGTGCCATTTGAATTTGCAAAAGAACATCTTCGCAATAGTACTGGGAGTGTCACGCTTATTGTAAAAGATAAAGATTGGACTGTTGGGTTCGCATTCAGAAGTTACAATAAACAAGAAGGTGCTGAATTGTCTTGGGGATGGAAGCAATTCTGTAAGGATAATGACTTGAAAGTAGGAGATGTTTGTGAATTTGAGCTCACTCAGAGATTCAAATTTCAAGTGACAATTTTCTCGGGTCGCCTCTAA 1482 0.3853 MDPHSPIHFYRIILKSNLETIMIPSKFTGRYGRCLSNPVFLKAPDAKEWKVYWTKRDNEFWFQKGWKEFVNFYSLGEGYLVLFKYEGTSQLVVHIIDKSSLEIEYPSSMDTSSQEDNLDNLSVDIIENLKDASQENNLDNLSDDVIEISDEMPPSPKASHNTPLSTSRPPKKMKSTTDEDVEMRSFDLQNMPVGKKTKDRQFQGKKFQKSTNADLKFSEEKSEDTGTRIFSKSKCLNYEQRRKKGLTDVEKNKALESARSFKSDNPFFIMVLRPSYVSSNSSLPMPKEFAGKHFKEECGVVQLQTLDGRIWHAKYKFPKIGEGWRKFVKENDLKVGHVCVFEMIDRSFKVHIFRDREKVAGNLKVNSSKMEQKSSMQDPPLEKATSSQSENPHFMRGFITFLIIVFYFLWQNVPFEFAKEHLRNSTGSVTLIVKDKDWTVGFAFRSYNKQEGAELSWGWKQFCKDNDLKVGDVCEFELTQRFKFQVTIFSGRL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0410 493 Pfam B3 DNA binding domain 18 98 IPR003340 GO:0003677
Lele13g0410 493 Pfam B3 DNA binding domain 413 490 IPR003340 GO:0003677
Lele13g0410 493 Pfam B3 DNA binding domain 268 354 IPR003340 GO:0003677
Lele13g0410 493 CDD B3_DNA 8 97 IPR003340 GO:0003677
Lele13g0410 493 ProSiteProfiles B3 DNA-binding domain profile. 413 492 IPR003340 GO:0003677
Lele13g0410 493 ProSiteProfiles B3 DNA-binding domain profile. 268 356 IPR003340 GO:0003677
Lele13g0410 493 SUPERFAMILY DNA-binding pseudobarrel domain 387 490 IPR015300 -
Lele13g0410 493 MobiDBLite consensus disorder prediction 364 389 - -
Lele13g0410 493 SUPERFAMILY DNA-binding pseudobarrel domain 4 99 IPR015300 -
Lele13g0410 493 MobiDBLite consensus disorder prediction 155 171 - -
Lele13g0410 493 SUPERFAMILY DNA-binding pseudobarrel domain 263 354 IPR015300 -
Lele13g0410 493 PANTHER B3 DOMAIN-CONTAINING 260 483 - -
Lele13g0410 493 CDD B3_DNA 266 354 IPR003340 GO:0003677
Lele13g0410 493 CDD B3_DNA 410 490 IPR003340 GO:0003677
Lele13g0410 493 Gene3D - 246 358 IPR015300 -
Lele13g0410 493 Gene3D - 373 491 IPR015300 -
Lele13g0410 493 SMART B3_2 268 357 IPR003340 GO:0003677
Lele13g0410 493 SMART B3_2 401 492 IPR003340 GO:0003677
Lele13g0410 493 SMART B3_2 9 99 IPR003340 GO:0003677
Lele13g0410 493 MobiDBLite consensus disorder prediction 148 183 - -
Lele13g0410 493 MobiDBLite consensus disorder prediction 365 389 - -
Lele13g0410 493 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Lele13g0410 493 Gene3D - 3 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0410 Lele-ChrLele13 16373927 16378077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0410 393 489 B3 DNA Binding Superfamily AT3G18990 33.333 4.67e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele13g0410 B3 9e-17 CL0405