Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0408 ATGAAAAAGCAAAACAGGGTTTTGCGGGTGGAAGAATTTGCTCGCTTTTACTCTCTAGATGAAGGGCATTTGATTTTGTTCAAGTATGACGGAACTTCTCTGTTTGACGTATGCTTATTTGATAAGCGTGCACTAGAAATAGACTATCCTTCTTCATCTAAGAATAATCTTAGTGATGATACAGTTGAAATCTTGGATGAGATGCCTCCAAACCGAAGGGCTATGAAAAGAACACGTTTTTCATCTTCTAGGCCTCATAAGAAATTGAAAAGTCTGCAGAATTTTCACGTGGGTTCAAAAATTAATCCTGGTCAATGGCAAGGAACAGAGTTTAAGAAATCAACCAATGCAGAATTGAAATTTCCTAAGAAGGAACCAGAAGAAGCAAGAATTTTTACCAAGAGTGAATGCTTGAATTCTGAGCATAGAAGGAAGAAAGCATTAACTACTGTGGAAAAGATCAGATCTATAAACAGTGCGAGTTCTTTCAAATCTGAAAATTCCTTTTTTATGGTGATGCCAATGAAATTCGCTAAAAGACATTTGGAGAAAGAGTGTGGTGTTGTGAAACTTGAGGCCTTGGATGGGAGAACTTGGCCTGCTAGGTATAATATTCCGAGAATCAAAGATGGATGGGAGAAGTTTGTAATGGAAAATGGTTTAAAAGTGGGCCAAATCAGCAGTATGCAACAGAGTCCTATTGAAAAGGCTAGCTCTTTCAAATCTGAAAATCCTCATTTTATGGTTAAGATGAAACATGCTTACATTGATGGCAGATTAAACTTGCATGTGCCATCACAATTTGCAAAAACACATCTTCATGACTGTACTGAGAGTCTCAAACTCGTTGTACAAGATGTAGCTTGGCCTGTTGAGTATGTATTTAGAATAACTCCTCAAGGAGCTCAAATCCATGAATTGTCTATTTGTGGATGGAAGCGATTTCGCGATGATAATGACTTGAAAGTAGGTGATATTTGTGTCTTTGAGCTCATCCCCGACATCAAACTTACACTTCAAGTAACAATTTTACGTGCGACTAAGCATTCCGCAAACTCTGGTAAAATGGAAAACCAATCACAAGATTTCTCATTATATCCTGTCTTGATCTGCTGA 1116 0.3763 MKKQNRVLRVEEFARFYSLDEGHLILFKYDGTSLFDVCLFDKRALEIDYPSSSKNNLSDDTVEILDEMPPNRRAMKRTRFSSSRPHKKLKSLQNFHVGSKINPGQWQGTEFKKSTNAELKFPKKEPEEARIFTKSECLNSEHRRKKALTTVEKIRSINSASSFKSENSFFMVMPMKFAKRHLEKECGVVKLEALDGRTWPARYNIPRIKDGWEKFVMENGLKVGQISSMQQSPIEKASSFKSENPHFMVKMKHAYIDGRLNLHVPSQFAKTHLHDCTESLKLVVQDVAWPVEYVFRITPQGAQIHELSICGWKRFRDDNDLKVGDICVFELIPDIKLTLQVTILRATKHSANSGKMENQSQDFSLYPVLIC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0408 371 ProSiteProfiles B3 DNA-binding domain profile. 156 243 IPR003340 GO:0003677
Lele13g0408 371 SUPERFAMILY DNA-binding pseudobarrel domain 242 347 IPR015300 -
Lele13g0408 371 SUPERFAMILY DNA-binding pseudobarrel domain 167 225 IPR015300 -
Lele13g0408 371 CDD B3_DNA 245 345 IPR003340 GO:0003677
Lele13g0408 371 Pfam B3 DNA binding domain 247 346 IPR003340 GO:0003677
Lele13g0408 371 Pfam B3 DNA binding domain 166 226 IPR003340 GO:0003677
Lele13g0408 371 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 231 348 IPR044837 -
Lele13g0408 371 ProSiteProfiles B3 DNA-binding domain profile. 247 347 IPR003340 GO:0003677
Lele13g0408 371 CDD B3_DNA 167 226 IPR003340 GO:0003677
Lele13g0408 371 Gene3D - 230 349 IPR015300 -
Lele13g0408 371 Gene3D - 140 229 IPR015300 -
Lele13g0408 371 SMART B3_2 247 347 IPR003340 GO:0003677
Lele13g0408 371 SMART B3_2 154 241 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0408 Lele-ChrLele13 16360363 16364011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0408 234 349 REM Transcription Factor Family AT1G49480 28.448 2.29e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele13g0408 B3 9.6e-13 CL0405