Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0378 ATGTCCCTCGTCATCAACATTGGCTTTGGCTACTCCATTGCCATCGCCCTCGCCTTCCTCGTTCTTGCCTCTACACTCATTCTCTCTTTCTACCTCTGCTGCCGCAACCGCAACCGCATCCCCATTTCGAATTCCAACCCGAATCCAAATATGAACCCGGCATCTCCTCGGTCGAATGTGGAATCCGAGGGTATTATTCTGCCTCGGGTGATTTTTGTGGCGGAGGAGGAGGAGGATGATAACGAGAGCGCGGTTGTGGGGCTCGACGAGAACGTTATAAACTCGTACCCGAGGTTGCAGTACAGTAGGGGTGCTATGGGTGTTGGAAGCAGTACGATGTGTTCGATCTGTTTATGTGAGTATAGGGATTCGGAGATGCTAAGGATGATGCCGGAGTGTCGCCATTATTTCCACCTCTTGTGCCTTGACTCTTGGCTTAAGCTAAATGGGTCGTGCCCTGTGTGCCGGAACTCGCCGCTCATGACGCCGATTTCGACGCCTCTGCAAGAAGTTGTGCCGCTCTCTCAGTACCCGGCTGATCGGAGGCGACGGAGGTGA 558 0.5358 MSLVINIGFGYSIAIALAFLVLASTLILSFYLCCRNRNRIPISNSNPNPNMNPASPRSNVESEGIILPRVIFVAEEEEDDNESAVVGLDENVINSYPRLQYSRGAMGVGSSTMCSICLCEYRDSEMLRMMPECRHYFHLLCLDSWLKLNGSCPVCRNSPLMTPISTPLQEVVPLSQYPADRRRRR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0378 185 Pfam Ring finger domain 113 156 IPR001841 -
Lele13g0378 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele13g0378 185 SMART ring_2 114 155 IPR001841 -
Lele13g0378 185 PANTHER RING-H2 FINGER PROTEIN ATL67 5 184 IPR044289 GO:0016567|GO:0016740
Lele13g0378 185 SUPERFAMILY RING/U-box 113 161 - -
Lele13g0378 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0378 Lele-ChrLele13 15870789 15871346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0378 8 178 C3H Transcription Factor Family AT5G06490 36.313 4.37e-33 115