LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g0374	ATGGCAGTTGTAGCTACCTCTTCCTCATCTCCCACCATGAGCCACAGCCACGACGACACCGCCACAACCGCTGCCAATGATGGCTGCGATGGCACCACCCTCAAGGACGACGACAACGACAACGACAACGACAACAACATCGACGACAACCACCAGCACGACATGGTCATGCCCGGCTTCCGCTTCCACCCAACCGAAGAAGAACTCGTCGAGTTCTACCTTCGTCGGAAGGTTGAAGGCAAGCGTTTCAACGTCGAGCTCATCACCTTCCTCGATCTCTATCGCTACGATCCATGGGAGCTTCCTGGGAAAGCTCCAAAAGGGATTCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCTCACCATGAAACCCAGCGCTTGCAGAAGGCTGAGGTATCACTGTGTCGAGTGTATAAGAGACCTGGTGCAGAAGAGCATCCCTCTCTTCCTCGTAGTCTCCCAACCAGACTCTCTACTTCATCATCATCAAGACCTTCTTCTTCTTCAGACAAGAATCATCATCATCATAATAATAACAAGCACAACATCAACGTTAATGTTCCAGAAATATTTCATCATCATCAAAACATGGGAACATTTCTTGAACAACAACCTCAGAATCATCATCGTCAAGATCAGCAAATCACTAACGAAACTGACCAGGGAAGCAGTAGCAGCACCGCTGCTACCGCGGCCACCACTAACAACAACAACAACAATAATTCAATAGTAATGTTGGATGATCAGAATAGGCTAGCGAGTTATAATAATAGTAACCAACAATATTTACAATACTATAATAGTGGTATTATTAATCCTATTCCTTCTTCTGAAAATCATCATCTTCTTCCTCACCATCTTCATCATCATCTTCAGTTCTCTAATCTACTACTGCAGCAGCAGCCACAAGTTCATCAACAACCAATGGTGGCTCTCAATACTTCTTTCTCTGCTGACAGATTGTGGGAGTGGAATCCATCATTAATCCCTGAAGCTACAAACCGAGAGTTCAGCAACATTTCCTTCAAGTCAAAGAGCTCGAACATCTCCAAATGTGCCATGAAGAGCTATGAACAAGAAATTGATGAAGGTCTATCTTATCACCGGCCAGACAGAGTAGGCACAACAGAGCAAGTTGGTGATAGAGGGTCAAAAGCAACGACCAATATCACCCGATCCTTCAATGGAGGTGAAAATACCAACTATCCTCTGGAGAAGCAGAAAGGATAA	1233	0.4517	MAVVATSSSSPTMSHSHDDTATTAANDGCDGTTLKDDDNDNDNDNNIDDNHQHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPGKAPKGIRTSWIMNEYRLPHHETQRLQKAEVSLCRVYKRPGAEEHPSLPRSLPTRLSTSSSSRPSSSSDKNHHHHNNNKHNINVNVPEIFHHHQNMGTFLEQQPQNHHRQDQQITNETDQGSSSSTAATAATTNNNNNNNSIVMLDDQNRLASYNNSNQQYLQYYNSGIINPIPSSENHHLLPHHLHHHLQFSNLLLQQQPQVHQQPMVALNTSFSADRLWEWNPSLIPEATNREFSNISFKSKSSNISKCAMKSYEQEIDEGLSYHRPDRVGTTEQVGDRGSKATTNITRSFNGGENTNYPLEKQKG	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	371	410	-	-
	Lele13g0374	410	Pfam	No apical meristem (NAM) protein	58	105	IPR003441	GO:0003677\|GO:0006355
	Lele13g0374	410	ProSiteProfiles	NAC domain profile.	56	194	IPR003441	GO:0003677\|GO:0006355
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	1	52	-	-
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	1	29	-	-
	Lele13g0374	410	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	54	105	-	-
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	205	242	-	-
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	381	410	-	-
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	153	168	-	-
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	144	183	-	-
	Lele13g0374	410	SUPERFAMILY	NAC domain	55	141	IPR036093	GO:0003677\|GO:0006355
	Lele13g0374	410	MobiDBLite	consensus disorder prediction	31	52	-	-
	Lele13g0374	410	Gene3D	NAC domain	65	104	IPR036093	GO:0003677\|GO:0006355
	Lele13g0374	410	Gene3D	NAC domain	105	144	IPR036093	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g0374	Lele-ChrLele13	15808648	15814056	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g0374	1	108	NAC Transcription Factor Family	AT2G02450	53.097	4.16e-29	115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Lele13g0374		NAM	1e-11	No_clan