Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0372 ATGGAAAGCTTATCGAGTCCTATACCTCGAACAGTAGAGGAGGTTTTTAGCGACTTTAAGGGCAGAAGAGCTGGAATGATTAAGGCCCTCACTACGGATGTTGAAAAGTTCTACCAGCAGTGCGACCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCCAATGAAACATGGCAAGTGAATTTGCCAGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCTCTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGTTATCACTTGTTGCAGTTCACAGTGATGCATGGCTCCTTGCTGTTGCCTTTTATTTTGGTGCTCGGTTTGGATTTGGTAAGAATGAGAGGAAAAGGCTTTTTCAAATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACGGGAAGTGCCAAGCAATCCAAGGATCAATTAGCAGCTCATACCAATGGTAGCAAAAGTAAATCAAGTGGGAAGGTGTCCCGCCAATCTGAGTCACAGGCCAAGGGAGTGAAGATGTCACCACCACCCAAAGAAGATGATGAGAGTGAAGAAGATGAAGATGACGAACAAGGCGCAACATGTGGAGCATGTGGTGATAGCTATGCCAATGATGAATTCTGGATCTGTTGTGACGTGTGTGAGAGATGGTTTCATGGAAAATGTGTCAAAATTACTCCTGCTAAGGCTGAGCACATTAAGCAATATAAGTGCCCAAGCTGCAGCAACAAAAGGGCTAGAGTCTAG 756 0.4471 MESLSSPIPRTVEEVFSDFKGRRAGMIKALTTDVEKFYQQCDPEKENLCLYGFPNETWQVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDQLAAHTNGSKSKSSGKVSRQSESQAKGVKMSPPPKEDDESEEDEDDEQGATCGACGDSYANDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0372 251 Pfam PHD-finger 198 247 IPR019787 -
Lele13g0372 251 FunFam PHD finger alfin-like protein 190 246 - -
Lele13g0372 251 SUPERFAMILY FYVE/PHD zinc finger 186 248 IPR011011 -
Lele13g0372 251 CDD PHD_AL_plant 198 247 IPR044104 -
Lele13g0372 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 250 IPR013083 -
Lele13g0372 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0006355|GO:0042393
Lele13g0372 251 SMART PHD_3 197 245 IPR001965 -
Lele13g0372 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lele13g0372 251 MobiDBLite consensus disorder prediction 145 195 - -
Lele13g0372 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lele13g0372 251 MobiDBLite consensus disorder prediction 145 173 - -
Lele13g0372 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0372 Lele-ChrLele13 15783220 15787891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0372 1 248 Alfin-like Transcription Factor Family AT1G14510 81.928 2.27e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele13g0372 Alfin 9.7e-70 No_clan