Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0359 ATGGAACTTTCCAGTGGAGAAGGAGAGATCCCAATCCCAATAAACAGTGCCACTAGCTATGGAGGGGGAAATAATGGCCATGGCCACATCATCCACCACCACCATCATGACCCTCCTCCAATCCACCGCATCATCTCTAATTCATCAGTCCTCCCAGTAGCATCAGTGCCGCCCCATAACAGCGTCGGAGTCATCGGAATCGGAGTAGCCGGAGGAGCAGGAGGCGGCGGCGGCGGGGGGGACATGGAGGAGGAGGAGGAGGAGGATGAGCATCATGGTGGGCCCTACAGCAGCAGCAGCAGCAGGAAACCAGTGGTGAAGTACAGAGAATGCTTGAAGAACCATGCAGCTTCCATGGGAGGGAATGCAACAGATGGTTGTGGAGAGTTCATGCCCAGTGGAGAGGAAGGAACCCTTGAAGCTCTCACTTGCTCAGCATGCCATTGCCACAGAAACTTCCACAGAAAAGAAGTTGAAGGCCACCATCTCCAAGAACAAGAAGATCCTCATCATCTTCATCATCTTCATCAGTATCATCATCATCCTTACAGATTATCATCAGGTACCAGAAAGCTCCTTCTTCATCCTCCGCCTGAAACCCTGGGCTACCCGACCCCACCGCCACCACCAGGTAACATCTTACCTTCTAGAATGATTATGCCCTACAATGTCATTGGGTCCCACCACTCAGACCTATCTGATGAGCAAGAAGATCATCATCATCATCATCATGGGATGATGAGGCCGCATCATCATCAGAACAAGAAGAGGTCCAGAACGAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGAGCTTTGCTGAGAGAGTTGGGTGGAAGATTCAGAAACAAGAAGAATCTGTTGTGCAACAGTTTTGTCAAGAGATTGGTGTGAAGCGGAGAGTTCTTAAGGTTTGGATGCACAACAACAAGAACAACCTCGCCAAAAAGAACATTAATCTCACAACAACTGACATAACTCCTCCTCCTCCTCCTCCTCCTACTACTACTACTACTTCACCACCTTAA 1029 0.4956 MELSSGEGEIPIPINSATSYGGGNNGHGHIIHHHHHDPPPIHRIISNSSVLPVASVPPHNSVGVIGIGVAGGAGGGGGGGDMEEEEEEDEHHGGPYSSSSSRKPVVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACHCHRNFHRKEVEGHHLQEQEDPHHLHHLHQYHHHPYRLSSGTRKLLLHPPPETLGYPTPPPPPGNILPSRMIMPYNVIGSHHSDLSDEQEDHHHHHHGMMRPHHHQNKKRSRTKFTQEQKEKMLSFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKNNLAKKNINLTTTDITPPPPPPPTTTTTSPP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0359 342 ProSiteProfiles 'Homeobox' domain profile. 253 317 IPR001356 GO:0003677
Lele13g0359 342 SUPERFAMILY Homeodomain-like 243 316 IPR009057 -
Lele13g0359 342 MobiDBLite consensus disorder prediction 1 35 - -
Lele13g0359 342 MobiDBLite consensus disorder prediction 229 265 - -
Lele13g0359 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 108 157 IPR006456 -
Lele13g0359 342 MobiDBLite consensus disorder prediction 243 258 - -
Lele13g0359 342 MobiDBLite consensus disorder prediction 73 104 - -
Lele13g0359 342 MobiDBLite consensus disorder prediction 325 342 - -
Lele13g0359 342 Gene3D - 241 317 - -
Lele13g0359 342 Pfam ZF-HD protein dimerisation region 106 158 IPR006456 -
Lele13g0359 342 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 255 312 IPR006455 -
Lele13g0359 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 92 313 - -
Lele13g0359 342 MobiDBLite consensus disorder prediction 321 342 - -
Lele13g0359 342 FunFam Zinc-finger homeodomain protein 2 242 316 - -
Lele13g0359 342 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 107 158 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0359 Lele-ChrLele13 15587630 15588658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0359 1 322 ZF-HD Transcription Factor Family AT2G02540 47.289 4.76e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele13g0359 ZF-HD_dimer 4.4e-29 No_clan