Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0346 ATGGATGGGAATGGAGTAGAGAGGGACCTGGAGATAGAGGGTGGCGGGGTGGCGATGATCATGGCGAATGATTATGGCAAACAAGACAGGGAAGACAATACGTCAGAATCAGAACCCTTTCTCCGAGAGCCTTTGCTTCTCAAGACCAATAGGATGAACAACACCTCGCAACTCGCCATTGTTGGAGCCAATGTTTGCCCTATTGAAAGTCTTGATTACGAGATCATTGAAAATGATCTATTTAAACAAGATTGGAGGTCTAGAACGAAGGTCGAGATATGCCAATATATTGTTCTTAAATGGACTCTTGCACTTCTAATTGGTTTGAGTACAGGGCTTGTTGGCTTTTTTAATAACCTTGCTGTTGAGAACATTGCTGGTTTCAAGCTTCTACTCACTAACAGTCTCATGCTCAAAGAAAAGTACTGCAGGTATTATCTGGCCTTCACGGCATTTGCCGGTTGTAACATGATTTTGGCCATTGCTGCGGCCATCCTCTGTGCCTACATTGCCCCCGCAGCAGCTGGGTCTGGCATACCCGAGGTGAAGGCCTACCTCAACGGTATAGATGCCCATTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATCTTTGGTTCAATTTTTGGTGTTGCTGCGGGGTTTGTTGTTGGTAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCCAATTTGCTCGGACAAGGGGGTTCTCAAAAGTATCGGCTGACATGGAAATGGCTCAGATTCTTTAAGAATGATCGAGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCAGGGGTTGCTGCTGCCTTCCGTGCTCCGGTTGGTGGCGTCCTTTTTGCGCTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGGACTTTCTTTACAACAGCAGTAGTAGCAGTAGTGCTGAGAGGTTTCATGGACTTGTGTCGGGGCGAAAACTGCGGTCTTTTTGGGGAAGGTGGGCTGATAATGTTTGATGTTAATGAAGCAAAGCCCGCATACAGCAGCCCTGATCTCCTGGCAGTTGTATTTCTGGGTGTCGTTGGGGGCATTTTGGGAGGCCTTTACAATTACCTTGTGGACAAGGTCCTTCGCACTTATAGCATCATAAACGAGAGAGGCCCTATATTTAAAATTGCACTTGTTGTCACAATCTCCTTTTTGACATCTTGTTGCGCATATGGCCTTCCATGGCTATCAAACTGCATCCCTTGTCCTCCTAACTTGGGGGACCAGTGCCCCACCGTAGGTCGCTCCGGCCACTACAAAAATTTTCAATGTCCGCCTAACCATTACAATGATCTTGCTTCTCTTGTTTTCACTACTAATGATGATGCCATCCGCAACCTCTTTATAGCAGGCTCAGACAAGGAGTTTAATCTCTCTACACTTCTAATATTCTTTGTTGCCATATACTTGCTTGGAATCATCACTTATGGAATTGCTGTCCCCTCTGGGCTATTTATTCCTGTCATACTTGCCGGGGCCTCGTATGGGCGCCTCGCTGGCAGTCTTTTAAGTCCATTCACCACACTCGATGTTGGATTGTTTGCCCTCCTTGGAGCCGCATCCTTCCTCGGTGGTACCATGAGAATGACTGTTTCTATTTGTGTCATACTCCTTGAACTCACTAATGACCTCCTTATGCTCCCATTGGTGATGCTGGTTCTTCTTGTTTCAAAGACTGTGGCTGATACCTTCAACAAAGGTGTATATGATCAGATGGTGAAAATGAAGGGGCTGCCTTATATGGAAGCACATGCTGAACCATACATGAGGCATTTAGTTGCAAGTGATGTTGTCTCTGGCCCTCTGATAACTTTTTCTGGGATTGAAAAAGTTGGGAATGTCATCCATGCTTTAAGTATTACTAGGCACCACGGATTTCCCGTGATCGACGAGCCTCCTTTCTCCGCTGCTCCCGAGTTGTGTGGTTTGGTTTTAAGGTCACATATTCTTGTGCTTCTTAAGAGGAAGAAGTTCACAAAGCAGAAGATGATGACTGGTTCTACCATTCTGAGAAACTTCAAAGCACGCGATTTTGCAAAGCCGGGGTTAGGCAAGGGCCTCAAGCTCGAGGATTTGGACATTTCAAAGGAGGAGATGGAAATGTATGTTGATCTCCATCCAATTACTAACACTTCACCGTATACAGTAGTTGAATCGATGTCCCTAGCAAAAGCTGCAGTTCTTTTCCGGGAGCTGGGCCTCAGGCACTTGTTGGTGGTGCCGAAGACACTCGCGAGACCTCCAATCGTTGGGATCTTGACAAGGCATGACTTCATGCCTGAGCACATTTTGGGACTATACCCTCATTTGGATCCACACAAGTAG 2361 0.4642 MDGNGVERDLEIEGGGVAMIMANDYGKQDREDNTSESEPFLREPLLLKTNRMNNTSQLAIVGANVCPIESLDYEIIENDLFKQDWRSRTKVEICQYIVLKWTLALLIGLSTGLVGFFNNLAVENIAGFKLLLTNSLMLKEKYCRYYLAFTAFAGCNMILAIAAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSQKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMDLCRGENCGLFGEGGLIMFDVNEAKPAYSSPDLLAVVFLGVVGGILGGLYNYLVDKVLRTYSIINERGPIFKIALVVTISFLTSCCAYGLPWLSNCIPCPPNLGDQCPTVGRSGHYKNFQCPPNHYNDLASLVFTTNDDAIRNLFIAGSDKEFNLSTLLIFFVAIYLLGIITYGIAVPSGLFIPVILAGASYGRLAGSLLSPFTTLDVGLFALLGAASFLGGTMRMTVSICVILLELTNDLLMLPLVMLVLLVSKTVADTFNKGVYDQMVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITFSGIEKVGNVIHALSITRHHGFPVIDEPPFSAAPELCGLVLRSHILVLLKRKKFTKQKMMTGSTILRNFKARDFAKPGLGKGLKLEDLDISKEEMEMYVDLHPITNTSPYTVVESMSLAKAAVLFRELGLRHLLVVPKTLARPPIVGILTRHDFMPEHILGLYPHLDPHK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0346 786 Pfam Voltage gated chloride channel 160 574 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 FunFam Chloride channel ClC3 92 411 - -
Lele13g0346 786 SMART cbs_1 613 666 IPR000644 -
Lele13g0346 786 SMART cbs_1 724 775 IPR000644 -
Lele13g0346 786 PRINTS Plant CLC chloride channel signature 320 327 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g0346 786 PRINTS Plant CLC chloride channel signature 444 460 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g0346 786 PRINTS Plant CLC chloride channel signature 288 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g0346 786 PRINTS Plant CLC chloride channel signature 302 312 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g0346 786 PRINTS Plant CLC chloride channel signature 74 82 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g0346 786 SUPERFAMILY CBS-domain pair 597 771 IPR046342 -
Lele13g0346 786 SUPERFAMILY Clc chloride channel 78 595 IPR014743 -
Lele13g0346 786 ProSiteProfiles CBS domain profile. 720 784 IPR000644 -
Lele13g0346 786 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 47 776 - -
Lele13g0346 786 Pfam CBS domain 722 770 IPR000644 -
Lele13g0346 786 Gene3D Clc chloride channel 92 593 - -
Lele13g0346 786 PRINTS Chloride channel signature 172 189 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 PRINTS Chloride channel signature 267 286 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 PRINTS Chloride channel signature 542 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 PRINTS Chloride channel signature 492 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 PRINTS Chloride channel signature 580 594 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 PRINTS Chloride channel signature 524 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g0346 786 Gene3D - 594 772 IPR046342 -
Lele13g0346 786 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 773 - -
Lele13g0346 786 CDD ClC_6_like 69 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0346 Lele-ChrLele13 15437204 15442943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0346 4 786 Ion Channels AT5G49890 76.786 0.0 1180