Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0334 ATGTCTATAATTGAGACCCCGACCGCCGATTGCGTACATCAGCGCGGCGGAGGTGGCGCCGATCACCACCGTGCCTCAACCAAACGTAAATTTGATGATTTCACGGCTGCTTTCAACGATGAGGGGGAAAATTTTGTTGATTGTTGTGATGTATGTGATATAGTAACGGTAAGAATGAGGAAAGACGAACCTAAAACCGAAAATTCTTGCAATTCTGAAACTTTTAATGGGTCTCTCTCAGATGTTATTACAGCCTCGTATGCCTGTTCGTCCCGGTCCGAATCGACTCGGCCATGGTCGAAGTTGCAATTTTTCATTCGATTGATGTCAGTTTCAAAAACTATAGTACTGAAAGCTTGTCCACAAGATACAGTAAAATCAATTCATGAACGTATCCAAGAAATTACGGGCATTCCGTTGTTTGAGCAGAGACTGATATATATGGGTAAACAGCTACAGTGGGAACAGACTCTGGTCGAGTGTGCAATTGAGAGAGATTGTCACCTTCATTTGGTTGGGCGCATGCGCAGCACAGAACATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCTCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAACATGATGCCTTGAAAACTATCAAAAGCCTCATGACTGAATATTTAAAAATGACTTCTAGAATTGATAATGATACAGCTTCTGGGTATTTCCAGATATTTTTGTCTTCATCTGCCCCTGTTGTGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGCTGATTGTTCAATTAGGCATTTCATGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTACATACTAAGTGCGCGTGTGTAGTGTTGGAGTTTTGCAAATTACTTAGACGGGCGGGTCCTGAGGATCCTTTGTATCTCTCTTGTCGGAGCACCTTTGGTTCTTTATTGGAGACTGCTAGTATTTCCTATGTTTCTGAGAGCGACAAGGAATTGATTTTAATTAATGATGTTCTCCCTTTTGTTCGAGAGATTGCAAATAGACTGTTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCCTCACCGAGTGATGTTCGGGATTTCACTGCATTCATACTTCCTCTAAGGACTAGAATCAACAAGCAACAAACTTTCAGGAGCCTATATTTTTCCAAGTCTGATGAAAAGCTAAATAAGCTCCTGTTGCCATTGGAAGAGGAAGATATTCGTCTTATATTTGGTGAATTGTTGCAAAAAATGGATCAGTGCCTTAATAAAATGCAGGAAACTTTGGCTGCCAAGGGACGAGATGAGGGAGATAATCTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAAGGAGCTGAAGTACAGTTTTGGTTGGTTTTAAGACGTCAGAGAAGTATGCTGGTTCTACTTATCACCCAGTATGCTAAGAGAACTGATGATCATCAGTGGATTCTGGAGCACAAGTGGGTAACAAATTTTGAATCTAGAAGGCATTTAGTGATGATGATGTTCCCAGATGTAAAAGAGGACTACGAGGAATTGCATGAGATGCTAATTGACCGGTCTCAGCTGTTGGCAGAATCATTTGAATACATAGCACGGGCAGAGCCTGAATCTCTACATGGTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAAGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCCGAGGAGATTTCTCCCCAATCCTGGTATGTTCCATCTAGAATCTTAG 1851 0.4192 MSIIETPTADCVHQRGGGGADHHRASTKRKFDDFTAAFNDEGENFVDCCDVCDIVTVRMRKDEPKTENSCNSETFNGSLSDVITASYACSSRSESTRPWSKLQFFIRLMSVSKTIVLKACPQDTVKSIHERIQEITGIPLFEQRLIYMGKQLQWEQTLVECAIERDCHLHLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDALKTIKSLMTEYLKMTSRIDNDTASGYFQIFLSSSAPVVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCACVVLEFCKLLRRAGPEDPLYLSCRSTFGSLLETASISYVSESDKELILINDVLPFVREIANRLLRALDMSMESPTSVGPSPSDVRDFTAFILPLRTRINKQQTFRSLYFSKSDEKLNKLLLPLEEEDIRLIFGELLQKMDQCLNKMQETLAAKGRDEGDNLYSAWSQYLSILKELYHLSKLYEGAEVQFWLVLRRQRSMLVLLITQYAKRTDDHQWILEHKWVTNFESRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHGGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDPRRFLPNPGMFHLES 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0334 616 Pfam Ubiquitin family 105 176 IPR000626 GO:0005515
Lele13g0334 616 MobiDBLite consensus disorder prediction 1 24 - -
Lele13g0334 616 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 103 609 - -
Lele13g0334 616 SUPERFAMILY Hect, E3 ligase catalytic domain 528 610 IPR035983 GO:0004842
Lele13g0334 616 Gene3D Hect, E3 ligase catalytic domains 491 616 - -
Lele13g0334 616 SMART ubq_7 104 174 IPR000626 GO:0005515
Lele13g0334 616 Gene3D - 95 190 - -
Lele13g0334 616 ProSiteProfiles HECT domain profile. 553 616 IPR000569 GO:0004842
Lele13g0334 616 PRINTS Ubiquitin signature 155 176 IPR019956 -
Lele13g0334 616 PRINTS Ubiquitin signature 113 133 IPR019956 -
Lele13g0334 616 PRINTS Ubiquitin signature 134 154 IPR019956 -
Lele13g0334 616 ProSiteProfiles Ubiquitin domain profile. 102 178 IPR000626 GO:0005515
Lele13g0334 616 SUPERFAMILY Ubiquitin-like 103 190 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0334 Lele-ChrLele13 15273189 15275039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0334 102 176 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.000 1.61e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0334 13 15273189 15275039 Lele15g2136 15 14261688 14274380 hybridization
Lele13g0334 13 15273189 15275039 Lele16g2191 16 17378002 17390870 hybridization