Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0328 ATGATATCTTTTCGCTTATTCATGTCTCTCGTACTTGTTCCCATCTTATACTCATCTTCTGCTACGAGTTATTCTACAGATGACATTAAATTATGGTGCAGCCAAACGCCAAATCCTCAACCATGTGAGTATTTCTTGAGCAACAACGTTAACCCAACGCATCAACTCAAAACCATCAAACACAAAGATGATTTTCTCAAGCTTTCACTTCAACTCGTTCAAGAGCGAGCCTTGATTGGTCATGCAAATACTGTTTCTCTAGAATCTAAGTGTCGTAATGCTCATGAAAAAGCAGCATGGGTTGATTGTATTGAGCTTTATGAGCACACCATTAACAGACTCAACAAAACCCTAGACCCCATCGCCAAATGCTCCCAAGATGACGCTCAGACATGGCTCAGCACGGCTCTAACCAACCTCGAGACGTGCCGAGCCGGGTTCTACGAGCTCGGTGTTCAGGACTACGTGTTGCCTTTGATGTCCAACAACGTCACTAAGTTGTTGAGCAACACTTTGGCTCTGAACAAGGTTCAATACCAAGAAGAAGCAAGATACAAAGAAGGGTTTCCAACATGGGTGAAGCCTGGAGATAGGAAGTTGTTGCAGTCTTCTTCTTCATCGTCTTCTAGGGCTAACGAAGTTGTGGCTAAAGATGGATCTGGGAAATACAAAACTATAAGTGATGCTATAAATGCAGCACCAAAGAGTAGCAGTGGCAGATACGTGATCCATGTTAAGGCTGGAGTTTACAACGAACAGGTAGAGATAAAGGCGAAGAATATAATGTTACTTGGAGATGGTATTGGGAAGACTATCATCACTGGAAGTAAAAGTGTTGGAGGAGGCTCCACCACCTTCCGTTCAGCCACCGTTGCTGTTATTGGGGATGGATTTATTGCTCAAGGCATCACATTTAGGAACACTGCCGGAGCTTCCAATCACCAAGCTGTTGCGCTACGTTCTGGTTCGGATTTATCGGTGTTTTACAGATGCAGCTTTGAAGGATACCAAGACACATTATATGTCCACTCTGAGCGACAATTCTACAGAGAATGTGACATTTACGGCACTGTGGACTTCATATTTGGTAATGCAGCAGTAGTTTTCCAGAGCTGTAACATTTTTGCTAGAAACCCTCCGAACAAAGTGAACACGGTAACGGCCCAAGGTCGAACCGATCCGAACCAAAACACCGGAATTTCCATCCACAATTGTAGGGTCACAGCAGCTTCAGACTTGAAACCGGTTCAGGCGTCTGTGAAAACCTATCTAGGAAGGCCATGGAAACAATATTCAAGAACTGTTTTCATGAAGACTTTCTTGGATAGCTTGATAAACGAGGCAGGTTGGTTGGAATGGAGTGGTAACTTTGCGTTAAACACTTTATATTATGGAGAGTACATGAACACTGGTTCCGGTTCTTCAACAGCAAATCGTGTTAAGTGGTCAGGTTATCACGTAATCACAAGTTCTTCAGAAGCTTCAAAGTTCACTGTTGGAAACTTCATTGAAGGAAATTCATGGTTGCCAGCCACCAAAGTTCCTTTCACTTCTACCTTATAG 1563 0.4331 MISFRLFMSLVLVPILYSSSATSYSTDDIKLWCSQTPNPQPCEYFLSNNVNPTHQLKTIKHKDDFLKLSLQLVQERALIGHANTVSLESKCRNAHEKAAWVDCIELYEHTINRLNKTLDPIAKCSQDDAQTWLSTALTNLETCRAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEEARYKEGFPTWVKPGDRKLLQSSSSSSSRANEVVAKDGSGKYKTISDAINAAPKSSSGRYVIHVKAGVYNEQVEIKAKNIMLLGDGIGKTIITGSKSVGGGSTTFRSATVAVIGDGFIAQGITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQSCNIFARNPPNKVNTVTAQGRTDPNQNTGISIHNCRVTAASDLKPVQASVKTYLGRPWKQYSRTVFMKTFLDSLINEAGWLEWSGNFALNTLYYGEYMNTGSGSSTANRVKWSGYHVITSSSEASKFTVGNFIEGNSWLPATKVPFTSTL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0328 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 177 IPR035513 -
Lele13g0328 520 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 176 IPR006501 GO:0004857
Lele13g0328 520 CDD PMEI-like_3 31 176 - -
Lele13g0328 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 177 IPR035513 -
Lele13g0328 520 SMART PMEI_2 24 174 IPR006501 GO:0004857
Lele13g0328 520 PANTHER PECTINESTERASE 9 512 - -
Lele13g0328 520 FunFam Pectinesterase 206 520 - -
Lele13g0328 520 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857
Lele13g0328 520 Gene3D - 206 520 IPR012334 -
Lele13g0328 520 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Lele13g0328 520 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Lele13g0328 520 Pfam Pectinesterase 213 506 IPR000070 GO:0030599|GO:0042545
Lele13g0328 520 SUPERFAMILY Pectin lyase-like 207 519 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0328 Lele-ChrLele13 15203248 15205191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0328 1 520 Carbohydrate Esterase AT2G45220 67.179 0.0 733