Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0280 ATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCCGCCAACCCAACTGCGCCGTCCGGACCTCTGGCCCCATCTGATTCTCCCGCCGTTGTTACCGCTACAGCTAATGGTGTTACACCTGGCGCTGCTGACCCTGCTGCGAGCAATATTCCTGGCCGCCGGAGCTTCCGGCAGACGGTTTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTTTTACACCAATATGACAAAGCGCGGATGCCCGTTTGCCGGTTTTTTAGATTATACGGGGAGTGCCGGGAGCAGGACTGCGTGTACAAGCATACAAACGAAGATATCAAGGAGTGTAACATGGTTATGTGTTCTGTACAATTGTTGATTGTCGGTTTAAATTCTGATGGGTCAGCAAAAGTTCAGGGTTTGGGAGAAGGAATGTGTGGAATATTTTGTGGAGTTGGGCAAATGTACAAGTTGGGATTTTGTCCGAATGGTCCTGATTGCCGGTATAGGCATGCAAAAGTTCCTGGACCTCCCCCTCCCGTAGAAGAAGTACTTCAAAAGATTCAGCATTTATATTCTTATAATTATGGCAACTCCAACAAATTTTTCCAACAAAGAGGTTCTGGCTATTCTCAGCAAGCCGAGAAATCTCAGTTTCCACAAGTTCCTAATTCTGCAAACCAAGCTGTGCCTGGAAAGCCATTACCAGCAGAATCGGGCAATGTCCAGCAGCAGCAGCAGCAACAGCAACAACAGTCAATACCACAGTCTCAGCAGCAGGGTAGCCAGAGTCAAATACAAAATACTACTAATGGTCAACCCTATCTGATGAACAGAACAACAATACCATTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAAGCTAAACTGAATGAAGCCTTTGACTTGGTGGAAAATGTGATATTGATTTTCTCAGTCAACAGAACACGACATTTTCAGCAAGATGGAAAACTAGTAGATATATCTAAAGTACTGGGGCTTACTATGTTATGGACTAAGAAAGCCCTCTTTGACTTGAGCATTGATAGATTTTCCCCCTCCAACACTTTACAACTATTTCCTTTGAATTCCATGAGTGGTGTAGTGTGTCTTTCCAGCATTGTTGGTTGTGCTAAGATGACATCCAGAATTGGGGGCTCTGCTACTGGAGGAAACTGGAAATATGCACATGGAACTGCACATTATGGACGTAACTTCTCAGTTAAATGGTTAAAGGCTTTTGGATTGAAGACTTCAGGTCTATGCAAGAGAATAAAGACAAAAAGAGAGTACGAATGGCTGGCCAAAGGGAAGAAAAAGAGAGCCGGGAGCTGTGAGTGTCATTTGGGCCATGAGTGTGGTGAGCTGGATGAGAGAGATTGTGTTTGTGGGATTGGAGAGGTTTATCAAGGGGCTTTGGAGGTTTGCCGGGATGCAGGCAGATTGACCTTGGATTTTGTGCAAAGCTCGGAACCCATAGTTTGGGCAAAGATAAGTAGAGATTGTCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTGTTTCACTTGCAGCAGAATCTAAGAGAGAGGAAGAGAAAGCAAAGGGAGTCAATCCAGATAATGGAGGAGACAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAGGAAGAGGAGGAAAGTGATGAAGAGGAGGAGAGCTTTGGCCCAGGGGTTGGGTCGGCTGCTCAAGGAAGAGGTAGGGGCAGAGGAATGATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCCCGGCCTATTCCAGGAATGCAGGGTTTTCCCCCACTAATGATGGGAGATGGTTTATCCTATGGACCAGTTACACCTGATGGATTTGGTATGCCAGATCTATTTGGTATGGGTCCTCGTGGTTTCGGTTCCTATGGTCCTAGGTTCTCTAGTGATTTTGCAGGGCCCCCGGCAGCGATGATGTTTCGTGGGCGACCCTCACAACCCGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCAGCACGTGCTCCTTTTATGGGTGGAATGGGGCCTGCAGGTGGAAATTCACCACGTGGCGGTAGGCCAGGTGGTATGCCTCCAATGTTCATGCCACCACCGCAACATCAGAATGCCAACCGTGTTCCTAGGAGAGATCAAAGAGCTAATGATCGGAATGATAGGTTTGGTTCAGGGCTAGAACAGGGCAAGGGTCCAGACATGATGGGCCAATCAGGTGGACTCGACGATGACATGCAATATCAGCAAAGATTCAACACAGGCCAGGAGGGTCAGAATGCTGTTGGAAACAACCTTAGAAATGAAGAGAGTGAAAGTGAGGATGAGGCACCTCGAAGGTCTAGACATGGTGAGGGGAAAAAGAGAAAAGGCGAAGTCTAG 2532 0.4743 MEDAEGVLSFDFEGGLDTAPANPTAPSGPLAPSDSPAVVTATANGVTPGAADPAASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMVMCSVQLLIVGLNSDGSAKVQGLGEGMCGIFCGVGQMYKLGFCPNGPDCRYRHAKVPGPPPPVEEVLQKIQHLYSYNYGNSNKFFQQRGSGYSQQAEKSQFPQVPNSANQAVPGKPLPAESGNVQQQQQQQQQQSIPQSQQQGSQSQIQNTTNGQPYLMNRTTIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDLVENVILIFSVNRTRHFQQDGKLVDISKVLGLTMLWTKKALFDLSIDRFSPSNTLQLFPLNSMSGVVCLSSIVGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKAFGLKTSGLCKRIKTKREYEWLAKGKKKRAGSCECHLGHECGELDERDCVCGIGEVYQGALEVCRDAGRLTLDFVQSSEPIVWAKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDNGGDNPDIVPFEDNEEEEEEESDEEEESFGPGVGSAAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPLMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGSYGPRFSSDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGPAGGNSPRGGRPGGMPPMFMPPPQHQNANRVPRRDQRANDRNDRFGSGLEQGKGPDMMGQSGGLDDDMQYQQRFNTGQEGQNAVGNNLRNEESESEDEAPRRSRHGEGKKRKGEV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0280 843 MobiDBLite consensus disorder prediction 725 843 - -
Lele13g0280 843 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Lele13g0280 843 ProSiteProfiles Zinc finger C3H1-type profile. 147 181 IPR000571 GO:0046872
Lele13g0280 843 MobiDBLite consensus disorder prediction 587 606 - -
Lele13g0280 843 MobiDBLite consensus disorder prediction 818 843 - -
Lele13g0280 843 ProSiteProfiles YTH domain profile. 296 486 IPR007275 GO:0003723
Lele13g0280 843 MobiDBLite consensus disorder prediction 562 627 - -
Lele13g0280 843 Pfam YT521-B-like domain 296 445 IPR007275 GO:0003723
Lele13g0280 843 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Lele13g0280 843 MobiDBLite consensus disorder prediction 562 576 - -
Lele13g0280 843 MobiDBLite consensus disorder prediction 758 775 - -
Lele13g0280 843 MobiDBLite consensus disorder prediction 793 817 - -
Lele13g0280 843 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Lele13g0280 843 SMART c3hfinal6 158 180 IPR000571 GO:0046872
Lele13g0280 843 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Lele13g0280 843 MobiDBLite consensus disorder prediction 213 235 - -
Lele13g0280 843 Gene3D ph1033 like domains 244 464 - -
Lele13g0280 843 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Lele13g0280 843 MobiDBLite consensus disorder prediction 213 285 - -
Lele13g0280 843 MobiDBLite consensus disorder prediction 245 285 - -
Lele13g0280 843 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Lele13g0280 843 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 528 835 IPR045168 -
Lele13g0280 843 Gene3D - 58 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0280 Lele-ChrLele13 13729525 13744582 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele13g0280 YTH 1.4e-21 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0280 13 13729525 13744582 Lele13g0280 13 13729525 13744582 ECH
Lele13g0280 13 13729525 13744582 Lele15g2188 15 15837319 15838841 hybridization
Lele13g0280 13 13729525 13744582 Lele16g2158 16 16823338 16841337 hybridization