Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0230 ATGATCCTAGGGATGGAAATGTCTCAACTTTATTGTCGAGGATGTAGGACATTGTTGATATACACACGTGGAGCTACAAGTGTTCGATGCTCCTGCTGTCATACTGTGAACCTTGCACCAGCTGATCTGTCTTCCTGTTCTGCTGCTTGTCTTTTTCAGAGGACCAACGGAAGGGTTCCCAATACTGTACACACACCAAATGGGACAACCAACTTTGGAACAGTACCTTCTACTTCAAGATCAATGCCCAATTCTCAAGGCCAAACTGTTGTGGTCGAAAACCCTATGTCTGTTGATGCAAGTGGGAAACTGGAGGCTTTTGAGTTTTCTTAA 333 0.4444 MILGMEMSQLYCRGCRTLLIYTRGATSVRCSCCHTVNLAPADLSSCSAACLFQRTNGRVPNTVHTPNGTTNFGTVPSTSRSMPNSQGQTVVVENPMSVDASGKLEAFEFS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0230 110 MobiDBLite consensus disorder prediction 61 87 - -
Lele13g0230 110 Pfam LSD1 zinc finger 12 36 IPR005735 -
Lele13g0230 110 PANTHER PROTEIN LSD1 4 104 IPR040319 -
Lele13g0230 110 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 9 38 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0230 Lele-ChrLele13 10495656 10498326 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele13g0230 zf-LSD1 3.2e-11 No_clan