Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0226 ATGGTCGGAGTCATCCTGTTGAGCAGTACAGTGACTATTGTCGCAAAGCGAACGCGCTTGAACTGGCAACAAGGTCCGGTCAAACGACCGACCACCAGCTCAGATGACCTAGACCGCCACGTGTCCGTAACTCTGAAGCTGAAATCTCATCCTCTCCCGCTAGTTGCCAGTTTCTACGAGGAGTGTATAATGGGTGAACACTTGGGGATTTTGAAAGTCATAGTTGTGCAAGGAAAAAGATTAGTGATTCGGGATTTCAAGAGTAGCGATCCTTATGTTGTGGTCAAGCTAGGAAATCAGACAGCAAAGACTAAGGTGATTAACAGCTGCTTGAACCCTGTTTGGAATGAAGAACTGAGTTTCACTCTGACAGAACCTGTGGGAGTTCTAAATTTGGAAGTATTTGATAAGGACCTTTTGAAGAGTGATGACAAGATGGGAAATGCCTTCCTCAACCTTCAACCATTAGTCTCTGCATCCAGAATAAGAGACATTTTACGGGTTTCCTCCGGTGAAACAACAATAAGGAAGCTTGTACCTGACAGCGAAAACTGCCTTGTTCGTGAAAGCAGTATCAATAGTGTTAATGGTGAGCTGGTGCAAAATGTTTGGTTACGGCTTTGGGGAGTCGAGTCTGGTGAGCTAGAGTTGACGATCAAGTTCATAACTCCTGTCACTCCCTCTGTATGA 690 0.4522 MVGVILLSSTVTIVAKRTRLNWQQGPVKRPTTSSDDLDRHVSVTLKLKSHPLPLVASFYEECIMGEHLGILKVIVVQGKRLVIRDFKSSDPYVVVKLGNQTAKTKVINSCLNPVWNEELSFTLTEPVGVLNLEVFDKDLLKSDDKMGNAFLNLQPLVSASRIRDILRVSSGETTIRKLVPDSENCLVRESSINSVNGELVQNVWLRLWGVESGELELTIKFITPVTPSV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0226 229 CDD C2_ArfGAP 68 213 - -
Lele13g0226 229 Pfam C2 domain 69 163 IPR000008 -
Lele13g0226 229 ProSiteProfiles C2 domain profile. 49 166 IPR000008 -
Lele13g0226 229 Gene3D C2 domain 59 179 IPR035892 -
Lele13g0226 229 SMART C2_3c 70 165 IPR000008 -
Lele13g0226 229 PRINTS C2 domain signature 85 97 IPR000008 -
Lele13g0226 229 PRINTS C2 domain signature 109 122 IPR000008 -
Lele13g0226 229 PRINTS C2 domain signature 130 138 IPR000008 -
Lele13g0226 229 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 67 223 IPR044562 -
Lele13g0226 229 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 67 222 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0226 Lele-ChrLele13 9470978 9475214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0226 64 222 C2H2 Transcription Factor Family AT4G05330 42.767 1.03e-35 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0226 13 9470978 9475214 Lele15g2215 15 18310083 18313781 hybridization
Lele13g0226 13 9470978 9475214 Lele16g2240 16 18802307 18802964 hybridization