Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0181 ATGAAACAAGCTAGAGAAGACACTGCTAGCATTCGTCTCACAGTGCCTTGGAAGTTGGAACCATTACTTATGGCTGAACCAGAAGACAAGCGTTATGCTTCCCTTGAGGAAGTGAAGAAGAGGAAGAGGACGAGGAGGAGGAATATACCGCGGAAATCTGCAACCGAGGAGCAGTTGGAACCTCAAGAATCAAACCAGCATGGGGAGGAAGAAGACGAAGAAGCTAAAGAGAATGATGGGGATAAGGAGCCTGCCGAGTTGCTTAAGAAAAAGAAGGATAAAAAGATGAAGCTTGGTGAAGGAGTGAGTGAAGGGGAAAATGCCGGCGATGAGAATGAGGAGGAGGAGGGCGAACGAAGGAAGTTAAAGAATGCTGGGTCTGGAATTATGAGCACTGTGTCGTTTGATTCTCTGGGATTGTCTGAACCTACTTTTAAGGCCATTAAGGACATGGGATTCGAGCATACGACTCAGATTCAAGCGAGAGCAATCCCACCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGAACGGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCTCGAAATGGAACTGGTGTCATTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCGAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCGTTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGCTAAAGGGGTAAATCTACTGGTCGCAACTCCTGGCCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACAACTTTGTTTTCAGCCACCCAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATCATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTACATACAGATTGATTGCTATAATATACATGGAAAGCAAAAGCAGCAAACACGTACTACTACCTTCTTTAACTTCTGTGAAGCAGAAAAGGGAATTTTACTCTGTACTGATGTTGCTGCCCGTGGACTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCAAAGGTTCCTATGAAAGAATATTTATTTGAGGAAAAGAAGCTGTCAAATGTACAATCTCACCTGGAAAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCAGCTTCATTCTGTTTTTCAACTCCACCAAAGGTGAGTTTAGGCATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAGATGATAACCACCAATTTGAGATTTGAATTACATGGAAATATGGAATCCTGA 1830 0.4219 MKQAREDTASIRLTVPWKLEPLLMAEPEDKRYASLEEVKKRKRTRRRNIPRKSATEEQLEPQESNQHGEEEDEEAKENDGDKEPAELLKKKKDKKMKLGEGVSEGENAGDENEEEEGERRKLKNAGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVIVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTTLFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKIMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCEAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPMKEYLFEEKKLSNVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSTPPKVSLGIDSSASKHRKKMRKMITTNLRFELHGNMES 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0181 609 MobiDBLite consensus disorder prediction 80 101 - -
Lele13g0181 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Lele13g0181 609 PANTHER RNA HELICASE 76 517 - -
Lele13g0181 609 Gene3D - 350 599 IPR027417 -
Lele13g0181 609 SMART ultradead3 152 357 IPR014001 -
Lele13g0181 609 Gene3D - 110 345 IPR027417 -
Lele13g0181 609 MobiDBLite consensus disorder prediction 26 125 - -
Lele13g0181 609 CDD DEADc_DDX18 144 341 IPR044773 GO:0003724|GO:0005524
Lele13g0181 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 340 IPR027417 -
Lele13g0181 609 SMART DUF4217_3 515 578 IPR025313 -
Lele13g0181 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Lele13g0181 609 Pfam Domain of unknown function (DUF4217) 516 576 IPR025313 -
Lele13g0181 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 514 IPR001650 -
Lele13g0181 609 MobiDBLite consensus disorder prediction 50 71 - -
Lele13g0181 609 FunFam RNA helicase 350 581 - -
Lele13g0181 609 Pfam Helicase conserved C-terminal domain 369 474 IPR001650 -
Lele13g0181 609 CDD SF2_C_DEAD 354 485 - -
Lele13g0181 609 Coils Coil 105 125 - -
Lele13g0181 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 489 IPR027417 -
Lele13g0181 609 Pfam DEAD/DEAH box helicase 157 328 IPR011545 GO:0003676|GO:0005524
Lele13g0181 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 339 IPR014001 -
Lele13g0181 609 SMART helicmild6 394 475 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0181 Lele-ChrLele13 4571890 4578037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0181 134 493 Eukaryotic Initiation Factors Gene Family AT3G13920 30.000 1.71e-46 167