Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0162 ATGGGTGCTCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGAAAATGGCGCACAATACTTAAGGATCCAGAGTTTAGTAGTGTCTTGTATCTGCGGTCTAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGCGTAATGGCAAATGGATGGAGCTCCCGAGACAAGTCTAGATTAGCTGTTAGAAGGACACATCAGGTCTCAAAACAAGATGAAAATGCTATGACTGGCTCTTCTGTTGTTCCGAGTGATGAAGAACTTATGGATGCCAGGGCTTCTCAAGTACCTAGAGATATGCTTCAGATTCCTGGTCCGAAAAGGTCTATTGTAAGAATGGATAACCTTATAATGGAAGCAATAGCTAGCTTGAGGGAGCCTGGCGGCTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATTGGGCACCTCCAGATCTCCGAAGGTTGTTGTCGACAAAACTGAAATCATTGACAGCAAGTGGGAAACTAATCAAGGTGAAACGAAAATATAGGATTGCTCCTATGCCAGCATATCCAGACCGAAGAAGAAACTCATCCTTGTTATTGACGGATGCAAGGCAGAGAATCTCTATGAAGATGGACAAGGATGAGGCCAATGTCATCACTAAGTCTCAGATAGATTTAGAACTAGCAAAGATAAGGTCAATGACAGCCCAAGAGGCAGCTGAAGTCGCTGCTCGAGCAGTTGCAGAAGCAGAAGCCGCCATAGCAGAAGCTGAAGAAGCAGCAAAGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCAGTGAAGACAATTAATGGAAGAAACACCCCGAAATTGACTTGTGGCTTGATTTGGGGAGATTTGATATTACAGATGCAATCTGTAGAGCTGATGCGAGCTTGA 954 0.4455 MGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRTHQVSKQDENAMTGSSVVPSDEELMDARASQVPRDMLQIPGPKRSIVRMDNLIMEAIASLREPGGSNKTNIAAYIEDQYWAPPDLRRLLSTKLKSLTASGKLIKVKRKYRIAPMPAYPDRRRNSSLLLTDARQRISMKMDKDEANVITKSQIDLELAKIRSMTAQEAAEVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADAAVKTINGRNTPKLTCGLIWGDLILQMQSVELMRA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0162 317 Coils Coil 243 280 - -
Lele13g0162 317 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g0162 317 Gene3D - 118 196 IPR036388 -
Lele13g0162 317 SMART sant 4 59 IPR001005 -
Lele13g0162 317 FunFam Telomere repeat-binding factor 1 8 87 - -
Lele13g0162 317 FunFam Telomere repeat-binding factor 1 118 198 - -
Lele13g0162 317 Gene3D - 2 59 - -
Lele13g0162 317 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lele13g0162 317 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lele13g0162 317 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Lele13g0162 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lele13g0162 317 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g0162 317 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele13g0162 317 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Lele13g0162 317 CDD SANT_TRF 6 56 - -
Lele13g0162 317 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele13g0162 317 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0162 Lele-ChrLele13 2582498 2588808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0162 1 296 Single Myb Histone (SMH) Gene Family AT1G49950 65.017 4.15e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele13g0162 Linker_histone 5.3e-08 CL0123