Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0142 ATGCTTCAGCAAAACCCAACCGAAGCCGCTGACGTCATCTCTGATGTCACCAAGACCCATTCCCCTATTTCCTACGCGGTCTCTCTCTTTTCACTGAAGCTTTGGTGGCTGATGATGTTTTGTTTGGGCCTTGACCCCACCGAGGATCTTATTATTGCTCTCAGAATCAGAAGTTTCTTGCTCTTTGAGCCATCCTCATCTTTGAGCTTTACTTCATCTTCCCGTTTATCAAATGGCGGCTCAGTCAGCCACAATGTATGTGCTTCTCTTTGCGCTGATCCTGGACCTAACCTTGAAGCAATCAGTTTGAGTAAGCTTAGCTCTAATTTAGAGCAGCTTTTGCTGGATTCTGATTGTGATTACAGTGATGCTGACATAATTGTTGAAGGAATTCCAGTCGCTGTTCATCGATGTATTCTTGCCTCTAGAAGCAAGTTTTTTCTTGAGTTATTCAAGAGGGAGAAAGGAACTCAAGAGAAGGAAGGAAAATTAAAGTATTTGATGAGTGATTTCTTGCCTTATGGCAAGGTTGAATATGAAGCCTTCCTCATGTTTTTGGGATATGTGTATACCGGGAAACTCAAGCCCTCTCCAATGGAGGTGTCAACATGTGTTGACAATGTATGTGCCCATGATGCTTGTCGACCTGCAATTAATTTTGCTGTTGAGCTGATGTATGCATCTTCCATTTTTCAAATGCCAGAACTGGTATCTCTTTTCCAGCGACGTCTTCTTAATTTTGTAGGGAAGGCTTTTGTGGAAGATGTTATACCAATCCTCATTGTTGCTTCCCATTGTCAATTGAGACAACTTGTCACTGAATGCATTGATCGGGTGGCACGATCAGACCTTGACAATGTCTCAATTGAGAAGGAGATTCCCCTTGAACTCTCAGAAAAAATTAAATTACTTCGGCGCAGCACCCAGCACGATGCCGAAGATAATGCTACTTTGGTGGATCCATTGCATCAAAAGAGAATCACCAGAATACACAAGGCATTGGACTCGGATGATGTTGAGCTTGTTAAACTTCTTTTAACTGAGTCTGATATAACTTTAGACGAAGCCAATGCTCTCCATTACGCTGCAGCATACTGTGATCCTAAGGTTTTCTCTGAGAGTGCTGTTAGCATCAGTAGGAGGTTAACAAGGCCAAAGGATTACCATGCAAAAACAGAACAAGGGAAGGAAACAAACAAAGATCGAATGTGTATCGATGTTCTTGAAAGAGAAATGCTGAGAAATCCAGTGTCTAGTGATGCTTCTATGTCTTTCCAAATAATGGGTGATGATCTGCACAGGAAGCTGCTATACCTTGAGAACAGAGATTCTGAGTTTTCCAACTTCTCAACAATGGTTGTGTGCTTTACTGTATGA 1377 0.4205 MLQQNPTEAADVISDVTKTHSPISYAVSLFSLKLWWLMMFCLGLDPTEDLIIALRIRSFLLFEPSSSLSFTSSSRLSNGGSVSHNVCASLCADPGPNLEAISLSKLSSNLEQLLLDSDCDYSDADIIVEGIPVAVHRCILASRSKFFLELFKREKGTQEKEGKLKYLMSDFLPYGKVEYEAFLMFLGYVYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQMPELVSLFQRRLLNFVGKAFVEDVIPILIVASHCQLRQLVTECIDRVARSDLDNVSIEKEIPLELSEKIKLLRRSTQHDAEDNATLVDPLHQKRITRIHKALDSDDVELVKLLLTESDITLDEANALHYAAAYCDPKVFSESAVSISRRLTRPKDYHAKTEQGKETNKDRMCIDVLEREMLRNPVSSDASMSFQIMGDDLHRKLLYLENRDSEFSNFSTMVVCFTV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0142 458 SUPERFAMILY POZ domain 106 246 IPR011333 -
Lele13g0142 458 ProSiteProfiles BTB domain profile. 122 198 IPR000210 GO:0005515
Lele13g0142 458 Pfam BTB/POZ domain 118 238 IPR000210 GO:0005515
Lele13g0142 458 SMART BTB_4 122 248 IPR000210 GO:0005515
Lele13g0142 458 Gene3D Potassium Channel Kv1.1; Chain A 97 280 IPR011333 -
Lele13g0142 458 Pfam NPR1/NIM1 like defence protein C terminal 380 442 IPR021094 -
Lele13g0142 458 Pfam Domain of unknown function (DUF3420) 283 331 IPR024228 -
Lele13g0142 458 FunFam Regulatory protein NPR3 96 280 - -
Lele13g0142 458 PANTHER REGULATORY PROTEIN NPR3 374 442 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele13g0142 458 CDD BTB_POZ_NPR_plant 105 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0142 Lele-ChrLele13 2343607 2348099 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele13g0142 BTB 3.4e-11 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0142 13 2343607 2348099 Lele13g0142 13 2343607 2348099 ECH
Lele13g0142 13 2343607 2348099 Lele15g2303 15 26857030 26862190 hybridization
Lele13g0142 13 2343607 2348099 Lele16g2277 16 22532441 22535042 hybridization