Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0047 ATGTATCTTACTAGGAAAACCCACAAGAAGCACAAATTTGTCTTAGTGAGAGGTTTGAGAGAAATGGATCTTTCTTTGAGTGTTGGGAGTGGTCATGGATCTGGTGATGAGCAAAACAGTGCAAGCTCTCATCAGACAGCTGCAACAAGGAAGCATGCTCATCGTCACACTCCTATGCAGATCCTGCGACTTGAAGAGTTTTTCAAGAACTACCCACATCCTGATGAGGAACAACGCAAGGATTTAGGAAGGGAGTTAGGGCTTGAACCCAAACAAATCAAGTTCTGGTTTCAGAACAAGAGAACTCAAACCAAGACACTGAATGAACGGATTGATAACAATGTTCTTCGTGCTGAGAACGAAAGAATTCAGTCTGAGAACTCAGCAATCAAAGAGGTTCTCATGAATGTAGCTTGCCCTGCTTGTGGTGGTCCCACCTATGGAGACGAAGAACACAGTCTTAATATGGAGAAACTGCTTCAAGAAAATGCATATCTCAAACAAGAGTATGAAAGAGCAACAAGGCTTTTAGCGGACTATATTGGGAAACCTGATCTGATAATGCAAAAGAGTTTCCTAAGCCTAGGAACTCCATCATCATCAACATCACAACATGGCCTGACCCTGTCCATTTCTGATGATAACACCAGCATGTTGCCACCAACAAACAACAAGAAGCAGGGAGTGAATTGGGAGACGGCCATTAGCGCCCTGGAAGAACTCATGAGGCTTGTTCGTGTGGAGGAGCCGCTGTGGGTCCCATCCGATGCATCCGGCGAGGTCCACGGAGTAGTCTTCTTCCTTCCTAATCGGGAAATCTATGAAAGGATATTCCCTAGGGCTCATCACCTCGGCAAGAAGCTCACTAATGCTCGGGTCGAATGTTCTAAAGCTTCTTGTGTCGTCAACATAACTCCCTTGCAATTGGTTCCCATGTTTCTAGATTCTGACAAATGGGTTAATCTGTTCCCAACAATTGCTGGAAAAGCCCGCACTATCAAAGTGATTGAAGCTGGTTTGTCTGTGAGTAGGAATGGAGCCTTGCAGCTGGTTACATGGGTGGAACACGTGGAAGTGGAGCACCAAGCCCTAATAGTGCCCATGCTATACAGAAACCTTGTTTCTGGCGGCATTGCTTATGGAGCTCAACGATGGGTTGTGGCGCTTGAGAGAATGTGCGAGAGAATTGGTTACACCATAAGCCGTCAGATTCCTGTTGATGAAGCTGCGTCTTCAGTGATGAGCATACCAGATGGAAGAAGGAGCCTCATGAAGCTAGGGCATCGAATGTTAAAGAGCTTCTGTGGAGCGATGATAGGCATGATGAACAACAATGGAAGAAAACAAGAACTTGCCCACATCAGTGAGGACAATGAGTTTGGTGTCAAAGTTTTCATTCGTCACAACCTCGAAAGGGGTCAACCTCAAGGCACCATTCTCACCGCCGCCGCTCCTCTTTGGCTCCCTATTTCTCCCCACCACATCTTCCTCTTCCTCCGCGACATCGCTCGACGATTCCAATGGGATGTTCTTTGCCATGAAAATTCGGAGCATGAGGTTGTACGTATCTCAACTGGAATTCATCCTGGAAACTACGTATCAGTTATCCAGACAAACAATAGTGAGAATGACAGCCTTGCGATTCTTCAAGAAACTTGTGTGGAGCCGATGGGATGTCTGCTGGTGTACGCTCCTTTGGACAACAGGACGATGAATGAAGTCATGCTAGGGGAGGACTCGACCACCGTGTCGATACTGCCGTCCGGCTTGGTGGTCGTGAGGGACAACATGGGAAGATCCGGCGGGGGGTCGATACTGACGATGACTTTGCAGATTATGGTGAGTAGCAGTGTGGAAATGACGAACATGAACATGGAAAGCGTGAATACGGTGAACAACCTCGTGAACAGCACGCTCAGTAAGATCAAGTTTGCTCTCATGAAGAATTAG 1950 0.4687 MYLTRKTHKKHKFVLVRGLREMDLSLSVGSGHGSGDEQNSASSHQTAATRKHAHRHTPMQILRLEEFFKNYPHPDEEQRKDLGRELGLEPKQIKFWFQNKRTQTKTLNERIDNNVLRAENERIQSENSAIKEVLMNVACPACGGPTYGDEEHSLNMEKLLQENAYLKQEYERATRLLADYIGKPDLIMQKSFLSLGTPSSSTSQHGLTLSISDDNTSMLPPTNNKKQGVNWETAISALEELMRLVRVEEPLWVPSDASGEVHGVVFFLPNREIYERIFPRAHHLGKKLTNARVECSKASCVVNITPLQLVPMFLDSDKWVNLFPTIAGKARTIKVIEAGLSVSRNGALQLVTWVEHVEVEHQALIVPMLYRNLVSGGIAYGAQRWVVALERMCERIGYTISRQIPVDEAASSVMSIPDGRRSLMKLGHRMLKSFCGAMIGMMNNNGRKQELAHISEDNEFGVKVFIRHNLERGQPQGTILTAAAPLWLPISPHHIFLFLRDIARRFQWDVLCHENSEHEVVRISTGIHPGNYVSVIQTNNSENDSLAILQETCVEPMGCLLVYAPLDNRTMNEVMLGEDSTTVSILPSGLVVVRDNMGRSGGGSILTMTLQIMVSSSVEMTNMNMESVNTVNNLVNSTLSKIKFALMKN 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0047 649 FunFam Homeobox-leucine zipper protein HDG1 35 123 - -
Lele13g0047 649 MobiDBLite consensus disorder prediction 31 47 - -
Lele13g0047 649 ProSiteProfiles START domain profile. 351 398 IPR002913 GO:0008289
Lele13g0047 649 MobiDBLite consensus disorder prediction 204 225 - -
Lele13g0047 649 SMART HOX_1 49 111 IPR001356 GO:0003677
Lele13g0047 649 CDD homeodomain 50 105 IPR001356 GO:0003677
Lele13g0047 649 Gene3D - 27 106 - -
Lele13g0047 649 SUPERFAMILY Bet v1-like 461 638 - -
Lele13g0047 649 MobiDBLite consensus disorder prediction 27 56 - -
Lele13g0047 649 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Lele13g0047 649 ProSiteProfiles START domain profile. 223 342 IPR002913 GO:0008289
Lele13g0047 649 SUPERFAMILY Homeodomain-like 32 107 IPR009057 -
Lele13g0047 649 Coils Coil 156 176 - -
Lele13g0047 649 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 351 646 IPR042160 -
Lele13g0047 649 Pfam Homeodomain 51 105 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0047 Lele-ChrLele13 513266 520389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0047 35 646 Homeobox Transcription Factor Family AT1G17920 34.726 3.34e-113 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele13g0047 Homeodomain 4.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0047 13 513266 520389 Lele15g2395 15 28231039 28237663 hybridization
Lele13g0047 13 513266 520389 Lele16g2353 16 23942904 23948704 hybridization