Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0041 ATGGCATCGTCCCAGGTTGAAATTTCCCTAACATCGCCATTTGGTTGTGTTCTCAGAAAATATAGCCATCGCGAGAGATTCAGGGAAAGTACTTCTTCTCGACTTTCTTCTTCACAAGTAACTCTCCAGAACAACAATGACAGAAGAAGCTTCGTCGTCGTCGGAGATCATCGTGTCGACAACATCTGCAATAATAATGCAGCACCACAAATTGATGTTGTTAATAAGAACAATAACAACAACAACAACATGAACTATGCTAAGGAGAAAGAAGATGAATCATCCTTATCCTCGTCGAACAACAAAGTTAACCCTAAGCAATCACAGATTCTGGATCGATGGGCCGCAAGAAAAGCGAAAGAAATGGTGTCAACGATCAAGACAGAAACTGAGCTATTGGAGAATCTGGGTTCTTCTGCTACTTCGTTGTCAGAAACATTGAATAATCGTGGAGCATCGTCTCTGGTTCAAATATGGGAAAAGAGATTGAATAATAATAACCAGAACGGCCAATCACTCAAGTGCAATATTACAACAAGCAGAACATCATCGCTTGGGTCATCAGATGTCGGAGAAATATTCACGGATGAATCATCATACTCAGATTGGGCAACAAGTGATACAAATAATGAAGCTACAACATGTTCGACCCCAAAGGTGGCGGATATTATAAAGAGATTGAAGGAGAATAAAAATTATGGGGAAGATCAACAAAGTAATAATTCAAAGAATAATAATAATAATAATAACATGATGATGATGATGATGGGATTCTCGTCATGTTTGTCAAGTAGGGAACAAGGACAAGGCACCAGCGTGGTGCTTCATCATGTCGCGAGATCTCCTCGCCTTCGAGGTCGAAAAGCGCTTACAGATTTGCTTATGCAGATGGAACGTGACAGAAATGGAGAGCTCAATAATCTGGCGCAGCTTGCACCTGTCTCCAATTTCTCACGAAGAGGTCGAGGTCGTATTCAGTCACTGCTGCGGCTTAGATTATTAAAACGGCACCATGAATCAACAATCTATGAAGTGAAGAGGAGACAACCAAAAGGGTCCACAATTATGCAACTCAGGGAAAGATTTAATATAGAAGCGAAACAAGAAAGTACAACTCAACCAGAAATAGCTAGTTCAAGTAACACGTGCCCTTATCAACCCGAAAACCCTCTTCCCCCTTCTAACCCTATGGGTGAGCATGGTTCGAGTCCGATCGGGTCAGACGGGGTGGTCAATGCGACAAATGGCCTCCGAAAAGATAATGAACACTCAGTAGCATGTGGTCAACAATCGGAGTCATCTCAAATAAATGAAGAAGAAGAAGCCCGTACAAGTTCATCAGAAACAGTAGTATGCTTAGAGGCTCAGAACATTATTGCATCATCATCACAAGAAGTTGAGGAGACAAGTAGTTGCAATATGGTTGATTCATCAGATGCAGATCATGAGACAAAAGAAGATGAAGCAGACGTGGCAGAGGTAAAGAGGGATGATAATAACAGTGTTGAGGCTGAAATCAATTATGTGGAAGAAGCAATGAATATGATTGAACAAGATCATGAATATGCAAGTGAAAGCAATGATTATGATGAGCAAAATTACGAGGATGATGAACATTATTATGATTGGATCAGTTCTATCGCTCGCCCTAGAAGCTATTGGGAAGATCGTAGACAAGCTTGGTACAAGGAGATGCTTGACACTGCTTCATCTGATAATAAACTAGAGATACGTCAACTTCTTCAACGAAGAACAGTTTCAACTTTCCTTTCAAGTGACTTCAGAGAAAGAATGGACAAATTGATGGAATATCACATAGGAACACAGACACAATTTATCAGTAGCCAAGAAGATAATGAAGACAATGAAGGGAGAATGGGGCAATTAATGTCATTTTTGCAGCAACATATACAGCGTCATGGTCGTAACCTTGAAGAAGAAGAAGCTGAAAAACAAGAGGTACAAGAAGAAGAAGAGAGATTGAGTAATAGTGGTTATACTGAAACCAGTGATGATGGTAATCAATCATCATCGTCATCATCAACACAGAATCTTACCTCGTCTTCTCCGAACATGTCATCATGGAGCTATAGAGACAACGAAACCAGTGATGATTCTGACATAGTTGATGAGTCTGCTACATCTTCAACACAGCCTTCTCGATCCCAATCTTTCTACCAAGATAGTCACCAATCCTCCTCATCCAATATCAATCCTCATTCAATGGAAATGGATTTGATATATGATATGAGAGGGCAGATGGAGCAATTGTACAGAGAAATGGCTGAGATCAGAAAATCATTAAAGAGCTGCATAGATATGCAGATGATGCTTCAACAATCAATGAAACGCGAAGTTAACTCAGAAAGAGAGAAGAAGAAGAAGAAGAAGATCAGTGAGCAGAAGAAGGCACAGAAGAAAGGGCAATGTTGTATATGCTACGAGAAGAAAGTAGACTCAGTTTTATACAGATGTGGGCACATGTGCACGTGTTTGAAGTGTGCGAATGAGTTGCAATGGAACAGTGGCAAGTGCCCAATATGTCGAGCTCCCATAGCAGATGTTGTCAGAGTTTACGTCGATGCTTAG 2589 0.4059 MASSQVEISLTSPFGCVLRKYSHRERFRESTSSRLSSSQVTLQNNNDRRSFVVVGDHRVDNICNNNAAPQIDVVNKNNNNNNNMNYAKEKEDESSLSSSNNKVNPKQSQILDRWAARKAKEMVSTIKTETELLENLGSSATSLSETLNNRGASSLVQIWEKRLNNNNQNGQSLKCNITTSRTSSLGSSDVGEIFTDESSYSDWATSDTNNEATTCSTPKVADIIKRLKENKNYGEDQQSNNSKNNNNNNNMMMMMMGFSSCLSSREQGQGTSVVLHHVARSPRLRGRKALTDLLMQMERDRNGELNNLAQLAPVSNFSRRGRGRIQSLLRLRLLKRHHESTIYEVKRRQPKGSTIMQLRERFNIEAKQESTTQPEIASSSNTCPYQPENPLPPSNPMGEHGSSPIGSDGVVNATNGLRKDNEHSVACGQQSESSQINEEEEARTSSSETVVCLEAQNIIASSSQEVEETSSCNMVDSSDADHETKEDEADVAEVKRDDNNSVEAEINYVEEAMNMIEQDHEYASESNDYDEQNYEDDEHYYDWISSIARPRSYWEDRRQAWYKEMLDTASSDNKLEIRQLLQRRTVSTFLSSDFRERMDKLMEYHIGTQTQFISSQEDNEDNEGRMGQLMSFLQQHIQRHGRNLEEEEAEKQEVQEEEERLSNSGYTETSDDGNQSSSSSSTQNLTSSSPNMSSWSYRDNETSDDSDIVDESATSSTQPSRSQSFYQDSHQSSSSNINPHSMEMDLIYDMRGQMEQLYREMAEIRKSLKSCIDMQMMLQQSMKREVNSEREKKKKKKISEQKKAQKKGQCCICYEKKVDSVLYRCGHMCTCLKCANELQWNSGKCPICRAPIADVVRVYVDA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0041 862 CDD mRING-HC-C3HC5_NEU1 810 849 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 639 665 - -
Lele13g0041 862 PANTHER BNAC05G24000D PROTEIN 1 861 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 230 252 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 461 477 - -
Lele13g0041 862 SUPERFAMILY RING/U-box 798 854 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 461 489 - -
Lele13g0041 862 SMART ring_2 810 848 IPR001841 -
Lele13g0041 862 MobiDBLite consensus disorder prediction 709 740 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 636 740 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 234 252 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 367 385 - -
Lele13g0041 862 ProSiteProfiles Zinc finger RING-type profile. 810 849 IPR001841 -
Lele13g0041 862 Coils Coil 630 664 - -
Lele13g0041 862 Coils Coil 499 519 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 73 106 - -
Lele13g0041 862 MobiDBLite consensus disorder prediction 666 699 - -
Lele13g0041 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 861 IPR013083 -
Lele13g0041 862 MobiDBLite consensus disorder prediction 365 448 - -
Lele13g0041 862 Pfam Zinc finger, C3HC4 type (RING finger) 807 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0041 Lele-ChrLele13 443896 448299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0041 767 858 C3H Transcription Factor Family AT3G06140 28.261 1.31e-08 55.8