Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0028 ATGTATCCCAGACTGATTCACTCGCATGAAGGGATGGTTGGTCAGGAAGACATGCAGGGTGGGTCCAACCCCAGTCACAACAACAACGGAGATCCGTGTCTGGTGTTGACCGCCGATCCCAAACCTCGTCTTCGTTGGACCCAGGACCTCCATGAACGATTCGTCGATGCTGTTACTCAGCTTGGGGGTGCTAGCAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTAAAGGGTTTGACTTTATTTCATTTGAAGAGTCATCTTCAGAAATACAGACTTGGCAAGCAATCAGGCAAAGATATGGTTGAGGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGTACTGATAACTCTTCCCTAAAGGTGCCAGCTTCTGATACGAATGAGGGTCATGAAATCAAGGAGGCTTTAAGAGTACAGATGGAAGTACAAAGTGAACTACATATGCAAGTGGAGGCAGAGAAGCATTTGCAGATTCGCCAGGATGCGGAGCGAAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAGTTTATTGGTGCTACAGTTATAGACACAGACAACCAAAATTTTCAAGGACATGGAAGTAAAGCACCAAGAGGCCCCTTTGTTGACCCTCTTGGCTTTTACTCCTTACCATCTACCGGTACAACCAGAGCTCTCGGAGAAGAATTACGTAATCTCCATTCCCAAAGGGCCGACTGTTCGACTGAAAGTTGCCTAACGTCGCATGAAAGTCCCGGAGGATTGACATTGGAAGGATCTTCCATTAGTGGGGCAAACAAGAGGATGCTGAGCTTGGAATCCATGGCGGCAGGCCCTTTGATGTGGAGTGAAGCCACCATGAGAAGTCAAGGTATCAATGTGGCCCAAGGTAACCTGCATGGAATAACTAGTGGTCGTGTGCTTCACCTAGATCTGCGCCCCTGTTCTTCATCTTTGCTCGATTCCGCTTCTGGATTAGTTGGTTCCGATGTGTTGAGCTTTCGGGTTGCAAATGCCTTCTTTTATTTATCATTGAAGAACCCTGCTGAGATTAACTTATCTCAAACACTTGCATCCGAAGATCTTTTGATGGAACCAAACAGAAGCATGGCTCAGGCTCATACACTGGAAGGTATCAAGGGAGGTGGAGGAACAATTAAGGTAGGGACCATTGGAACAATCAGTTCCTTAATGACAAGGGAATTGGAGCAGCAGATCCCTTCTACACCACACAAGCCAATAACTTCAAGGACTAAACCTCGAACACTTTCGAGTAATAGTAATACTACACCCAAAAAACTACATCCAAGAAAATCATTTGATGAAGGTAGCAGCAGCAGTGCAATCCACAGAAGCACCAAAATTCCCCAAAAAACGAAATCTAATGGCAGACATAGCCATCGTGCACCCATGCTTGGTTTTGATAGCTTTGTGGTGGACAGAAGTCCAATGAGGGAGAAAAATGATAAGAAGATATCTAACATTGTTGAAGTTGTGGACGTAAAATGTGGGAACTCAGATAAAGCCTGGGCTACCCCTCTAACAAATCGCCTCAAGAAGCTGGGTTTCTCAAAGCTTTCTGAGACCATTAACTAA 1605 0.4548 MYPRLIHSHEGMVGQEDMQGGSNPSHNNNGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMVEGCKDGSYLLESPGTDNSSLKVPASDTNEGHEIKEALRVQMEVQSELHMQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDNQNFQGHGSKAPRGPFVDPLGFYSLPSTGTTRALGEELRNLHSQRADCSTESCLTSHESPGGLTLEGSSISGANKRMLSLESMAAGPLMWSEATMRSQGINVAQGNLHGITSGRVLHLDLRPCSSSLLDSASGLVGSDVLSFRVANAFFYLSLKNPAEINLSQTLASEDLLMEPNRSMAQAHTLEGIKGGGGTIKVGTIGTISSLMTRELEQQIPSTPHKPITSRTKPRTLSSNSNTTPKKLHPRKSFDEGSSSSAIHRSTKIPQKTKSNGRHSHRAPMLGFDSFVVDRSPMREKNDKKISNIVEVVDVKCGNSDKAWATPLTNRLKKLGFSKLSETIN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0028 534 MobiDBLite consensus disorder prediction 407 436 - -
Lele13g0028 534 MobiDBLite consensus disorder prediction 444 459 - -
Lele13g0028 534 MobiDBLite consensus disorder prediction 1 30 - -
Lele13g0028 534 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 259 IPR044848 GO:0003700
Lele13g0028 534 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Lele13g0028 534 MobiDBLite consensus disorder prediction 407 472 - -
Lele13g0028 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Lele13g0028 534 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Lele13g0028 534 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Lele13g0028 534 FunFam Myb family transcription factor 40 98 - -
Lele13g0028 534 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
Lele13g0028 534 Gene3D - 40 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0028 Lele-ChrLele13 318379 325279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0028 30 271 G2-like Transcription Factor Family AT3G24120 46.667 1.77e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele13g0028 Myb_DNA-binding 1.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0028 13 318379 325279 Lele15g2419 15 28468030 28470773 hybridization
Lele13g0028 13 318379 325279 Lele16g2376 16 24158249 24160427 hybridization