Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1235 ATGAAGCCTACTAAACCGGGTTTGGAGGAACCCCAAGAGCAGATTCACAAGATTAGGATTACGCTGTCCTCCAAGCACGTGAAAAATCTTGAGAAAGTTTGTGCGGACTTAGTTCGTGGTGCCAAGGACAAGAGGCTTAGGGTCAAGGGACCTGTGAGAATGCCCACTAAAGTTCTTCACATCACCACCAGGAAATCTCCATGTGGTGAAGGTACCAACACCTGGGATCGGTTTGAACTTAGGGTTCACAAGAGAGTGATCGACCTCTACAGCTCTCCTGATGTGGTCAAGCAGATCACCTCCATCACAATTGAACCCGGTGTGGAGGTTGAGGTCACCATTGCTGATGCTTGA 354 0.4887 MKPTKPGLEEPQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1235 117 FunFam 40S ribosomal protein S20 2 116 - -
Lele12g1235 117 PRINTS Ribosomal protein S10 family signature 52 67 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele12g1235 117 PRINTS Ribosomal protein S10 family signature 17 30 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele12g1235 117 PRINTS Ribosomal protein S10 family signature 74 88 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele12g1235 117 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 10 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele12g1235 117 SMART Ribosomal_S10_2 19 113 IPR027486 -
Lele12g1235 117 ProSitePatterns Ribosomal protein S10 signature. 41 56 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele12g1235 117 Pfam Ribosomal protein S10p/S20e 19 113 IPR027486 -
Lele12g1235 117 Gene3D Ribosomal protein S10 domain 3 116 IPR036838 -
Lele12g1235 117 SUPERFAMILY Ribosomal protein S10 17 114 IPR036838 -
Lele12g1235 117 Hamap 30S ribosomal protein S10 [rpsJ]. 15 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele12g1235 117 TIGRFAM uS10_euk_arch: ribosomal protein uS10 16 114 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1235 Lele-ChrLele12 19269702 19270967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1235 1 117 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 92.308 2.23e-76 219