Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1230 ATGGGTTCTTCGAATAACGGTGGGGTGCCGCCGGGTTTCCGGTTTCATCCGACAGATGAAGAGCTTCTTCATTATTACTTGAAGAAGAAGTTGAACTTTCAGAAGTTTGACATGGAGGTCATTAGAGAAGTGGACTTGAACAAGATTGAGCCTTGGGACTTGCAAGACAGATGTAGAATAGGATCAACACCACAGAACGAGTGGTACTTCTTCAGCCACAAGGACAGGAAGTATCCAACGGGATCGAGGACGAACAGAGCGACCAACGCCGGCTTCTGGAAGGCGACGGGACGAGACAAGTGTATCAGAAACAGCTTCAAGAAGATCGGCATGAGGAAGACTCTCGTCTTTTACAGAGGTCGAGCTCCTCATGGCCAGAAAACTGACTGGATCATGCATGAATATCGCCTCGAAGATGCTGACGATACTCAAGCTAATCCCAATGAAGATGGGTGGGTGGTTTGCAGAGTGTTCAAGAAGAAGAACCTATTCAAGATTGGGAATGAAGGAAGCTCCATGCATAACGCAGACCAACAACTCAACAATTCCTCAAGCATCTATCAACCTCGTTCCTTCATGAGCAGAGAAAGCCAATACTTACTTCATCATCATCATCAACAACAGCAACAAAACCCTAGAAACTCTTCTGGCTTCCAGCTCGAAAAGCCTGAGCTTGCTCTTCATTATCCTCCTCCTCACTTGCAAAGCCCTCAATACTCACTCTTCCAGGCTCAACCCCTTCTTCCTCCTGCGGCTCACTACAGTTCATATTCATCAGCCCTACCTTCAGACACACCTCCCATGGCCGCCAAACAACTCATGACGAACCCGGCCGTGGGCGACTGCGATAGCGGCAGCGAGGGATTGAGGTACCAAGTTTCAGAGACTGCAAATATGGAGGTTGGCCCGTGTGAGCCCACAGGTCATCATGAGATTGGAACAACAAGAGAAGATCAAGGGTTTAACGAATGGGGCGTGCTGGATAGGCTTGTGGTCACTTCACATCATCTTGGAAATGAAGAATCATCCAAAGGGGTTAGGTTTGAGGATGCAAATAATAATCCTCAATCTGTTCATCAGATCAATCATCAGCAGCAACTTTCATTGCGTGGAGAAGTCGACTTTTGGGGCTATGGAAAACAATAA 1146 0.4738 MGSSNNGGVPPGFRFHPTDEELLHYYLKKKLNFQKFDMEVIREVDLNKIEPWDLQDRCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEDADDTQANPNEDGWVVCRVFKKKNLFKIGNEGSSMHNADQQLNNSSSIYQPRSFMSRESQYLLHHHHQQQQQNPRNSSGFQLEKPELALHYPPPHLQSPQYSLFQAQPLLPPAAHYSSYSSALPSDTPPMAAKQLMTNPAVGDCDSGSEGLRYQVSETANMEVGPCEPTGHHEIGTTREDQGFNEWGVLDRLVVTSHHLGNEESSKGVRFEDANNNPQSVHQINHQQQLSLRGEVDFWGYGKQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1230 381 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Lele12g1230 381 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Lele12g1230 381 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Lele12g1230 381 FunFam NAC domain-containing protein 18 164 - -
Lele12g1230 381 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Lele12g1230 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1230 Lele-ChrLele12 19243182 19245853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1230 3 377 NAC Transcription Factor Family AT1G33280 53.316 2.30e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele12g1230 NAM 1.3e-36 No_clan