Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1227 ATGGTGGTGAATGAAAGGCCATCGAAGAGGATGAAGAGGAGAGTCTCCGCCGATCATTATGATTTTCTCACTTTTCCGGCCGCCGGTGACCGCTGCTGCGACGATGTGGTCTGTGGCGGTAAACCGTTCCGGAAAACCGTTCAACGGTTTCTTACTAATTATGCGATGGTCACATATCCCCCGTCGTTATTTTCCTCGTTGATGACGTGGCAGATATTGTTCCGGATCGGAGGACTAGTCGATGGGTCCGATCTTTCGCCTGCGATTGTCACTCTCGACATTGTGGAGGAGGACGTTACTCGATCTCGAGCCTCAGTCTACTGTGATCAGTGCCGAGTTGTTGGATGGAGTGGCCACCCAGTATGCCGAAAGCGATACCATTTCATTATTCGAGCCTCAAGTAATCACATGGATGCATATGAAAGACCTTGTTCATTATGTGGGAAATCTACCCAATTATCGGAAGCAAGGTGTAAATGGTGTGACGCTGTGATTACTGTTGAAGATCTAGAGGATTGGGTGTATAGTCAAATTGAAGACAACACTCATGTTCTGCACGGGATTGTCCACTCCAATGGTTATGGCCATTTGCTTACTCTTAATGGGAGAGAGGGTGGTTCAAAGCTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTCTGTGTTGCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGGATGGAATACCGATTGCTTCATGCAATCACCTATGGGTGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTAGCTATGCTCTCACTCAAGATTCGTACCAAAAAGCAGTGAATACCCTGTCAAGCATGCCCCTATCGGATTTATTATTCCAGGATCGTGGGCCCCGAAGTCGCCTGCAGTGTGTTATTGCTCTTTATCAATCTTTGGCAGATGCTGATCTTTTAACTATCAAAGATCTATTCTTCTTTTTGGTGGCCTTAATTCGTGAGTTCCACAAGCCTCTGACCTCAGGAACATCGAACGAGGAAAGTTGCAATGTGTTATGTGCTTGGACAAGCAATGATGTGGAAGCTGTGCAACAGGCTTTGATCAAAGTACTGCTTGCATCGGCAGCCTCTAGTGGGGCGAAATGGGTGACAAGACGAGCTCTCAAGGGTGCATTAAGTAGGGGTGTTGCATCTCCAGAGCTTCTAGATTACAGTCTGAAACATCTGGGTGGAAAATCAGCTGCCTATGGTATGGTAGTTAGGTCAAGGTGCAATCCCACATCTAGTGCTGTGGAGTTCAGGCTTGAAACCTTGAATGTTACGGAAAATGAAGTTAGTGCAAATTCAGGATATCCATCAGAAGAGCAAGTGATTGCGGATTTGAAATTCTTGTTTGATTCGATCATTCATCCTGAAAGTATGGTGAGCTACAGACCTAAGGTTATGAGGAAGCGGGTGGCTGATTCGGCGAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAAGCCTACAGATAAGATGACAGGTGAACAAGTGCCTCCATGTATTAGGCTGTGGTGTAATGTGGAGCTTTCGGATCAGCCAAAAGATGATCCAACTCCTCCTCCAGAACTGATTTTGCTGCCGTTGAATGCCACTGTAGCTGACCTAAAGAATGAGGCAACTGATACTTTTCAAGAAGTGTATGCCATGTATAAGAGGTTTCAAGCAGAGGAACTTTTGGAATATGGGTCTATCAAGGACAATCTCACTGTGAAGTTACTACTTGGAACAAGTGGGTCTGTCCGAATTTTAGGCAAATGCCCGGCAAAACATGGCCTAAACCGCTTCCGAATGGAAAGAGGAATGGAGACGTGGAAAGTTGATTGCCCTTGTGGGGCTAAGGACGATGATGGGGAGAAAATGTTAGCATGTGATACTTGCGGTGTCTGGCAACATACCAGGTGTGCTGGAATTGATAATTCCAATGCTGTTGCTTCTAAGTTCGTTTGCGTGAGATGCATCAAATCATACCGCAAGGAGGCCAAGAAACAGCCCGACTCTGTTGAACAAAAAATCCACCCTATGGATGAACCAAGAAACTACGTTGCTACTGAAGCAACAAACCACCCTATGGATGAACCAAGAAAATACGTTGCTAATGAAGCAAAAAACCACCCTATGGATGAATTGAAGAACGACAACGTGGAAGAAGCAAATATAACATGTAAACAGAACTCAATCGATGAAGCAAGAACCCCCAGTAAAGCAAAATCGTCGTGCAGGGGGGAGGTGGTGGCTGCAGACAGTCCTGGAGTTGCTTGCAACCTGGCTCTGAATTTTGGTGTACGTTGA 2337 0.4574 MVVNERPSKRMKRRVSADHYDFLTFPAAGDRCCDDVVCGGKPFRKTVQRFLTNYAMVTYPPSLFSSLMTWQILFRIGGLVDGSDLSPAIVTLDIVEEDVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRASSNHMDAYERPCSLCGKSTQLSEARCKWCDAVITVEDLEDWVYSQIEDNTHVLHGIVHSNGYGHLLTLNGREGGSKLLSGSDIMSFWDRLCVALAVRKVSVMDLSKKFGMEYRLLHAITYGCSWYGNWGYEFGTGSYALTQDSYQKAVNTLSSMPLSDLLFQDRGPRSRLQCVIALYQSLADADLLTIKDLFFFLVALIREFHKPLTSGTSNEESCNVLCAWTSNDVEAVQQALIKVLLASAASSGAKWVTRRALKGALSRGVASPELLDYSLKHLGGKSAAYGMVVRSRCNPTSSAVEFRLETLNVTENEVSANSGYPSEEQVIADLKFLFDSIIHPESMVSYRPKVMRKRVADSARKLLDCKQFMKDYKPTDKMTGEQVPPCIRLWCNVELSDQPKDDPTPPPELILLPLNATVADLKNEATDTFQEVYAMYKRFQAEELLEYGSIKDNLTVKLLLGTSGSVRILGKCPAKHGLNRFRMERGMETWKVDCPCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSNAVASKFVCVRCIKSYRKEAKKQPDSVEQKIHPMDEPRNYVATEATNHPMDEPRKYVANEAKNHPMDELKNDNVEEANITCKQNSIDEARTPSKAKSSCRGEVVAADSPGVACNLALNFGVR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1227 778 CDD PHD_MMD1_like 623 668 - -
Lele12g1227 778 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 678 - -
Lele12g1227 778 SUPERFAMILY FYVE/PHD zinc finger 614 671 IPR011011 -
Lele12g1227 778 Pfam PHD-finger 624 670 IPR019787 -
Lele12g1227 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Lele12g1227 778 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Lele12g1227 778 SMART PHD_3 623 669 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1227 Lele-ChrLele12 19223492 19226573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1227 86 668 PHD Transcription Factor Family AT5G22260 29.058 3.24e-81 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele12g1227 PHD 6e-09 CL0390