Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1223 ATGACTCCGGCGAATTTGGCAGGCCAGTTTGGGGACACAACATACACAAAGGTGTTCGTAGGAGGGTTGGCTTGGGAGACTCAGAAGGAAACTATGAAGAAATATTTCGAGCAGTTTGGTGAGATCTTGGAGGCTGTCGTCATCACTGACAAAGCTACTGGCAAATCTAAAGGCTATGGATTTGTAACTTTTCGGGAACCAGCAGCGGCCCTGAGAGCTTGTGTGGATACTGCTCCAGTGATAGATGGTAGGAGTGCTAATTGCAACCTTGCTTCTTTGGGCGTCCAGAGATCCAAGCCTTCTACCCCAAAGCATGGAGGAGGGAGGAACTTTAGGGTGATGGGTTCGTTTCAGACAGGGTTTGGAGGAGTGGGATCAACTTTTCCTTCTGCTGCTCCACCAACACTTCCTCATTATGCTCTCCAGCAAGGAACGCCTTATAATGTTTATGGGTACTCTCCATACTCACCAGATTACACTTACCCTACGGGTTACTATAGTGTGTATGGAGGAGCAACCCAGTACCCACTGTATGGAACCGGACCAGGAGGCATGATGACGAGTGCTGCGGCAGCAGCCACCGCCATCTACCCATATATGCAGTTCGGAGAAGGGAGCGGCAGCGGCGTAACCGGGGGCTACACTTCCGGTCAGGGTTATGGTGTGTACTACCCGCCACAGCTGTTTCAGTACTCTCCCCTTTCTTCATCTGCTGGCTACGCACAGCACTATGCTCCCCCCATGTCTCTTGCACCTTCGCCAGCTTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGAGTGA 801 0.5156 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPAAALRACVDTAPVIDGRSANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQTGFGGVGSTFPSAAPPTLPHYALQQGTPYNVYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPGGMMTSAAAAATAIYPYMQFGEGSGSGVTGGYTSGQGYGVYYPPQLFQYSPLSSSAGYAQHYAPPMSLAPSPALQSVCFAVPQE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1223 266 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele12g1223 266 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele12g1223 266 PANTHER BOULE-RELATED 4 247 IPR037366 -
Lele12g1223 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lele12g1223 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Lele12g1223 266 SUPERFAMILY RNA-binding domain, RBD 12 123 IPR035979 GO:0003676
Lele12g1223 266 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Lele12g1223 266 Gene3D - 4 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1223 Lele-ChrLele12 19176836 19181722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1223 1 188 C2H2 Transcription Factor Family AT2G19380 28.502 6.77e-14 69.3