Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1218 ATGTCTCAAGAGAGTTCAGTTTCCGACCCTTCTTCGGCTTGCTGCTCAAGATCGGATCATTTGGATTCAGCTTCAGCTGAGCTCAAGCTATACCGAGCCTTCATTTTCTCTGTGCCCATCTTCTTCACTTTCATCCTGCTCTTTCTCTTCTACGTGTTCTACCTTCGACCTCGGAGGGTTGATTGGTCGTCTCTTAGGATGAGAGCGTTTGCGACTGCAGAGGATAATGACGGTAACTCCAGGCCGCTTGAATTGGGTTTGAAGAAAGAACTGAGAGAGATGCTGCCGATTATCGTATACAAAGAAAGCTTCTCAGTTAAAGATACGCAATGTTCAGTTTGCCTTTTGGACTACCAAACAGAAGACAAGCTTCAACAGATACCTGCATGCGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTCACCAACCACAGCACCTGCCCTCTCTGTCGCCTGTCCCTTCTAGCTTATGCTAAATCTTCAACTGAGGCATCTAATTTACAGAGACCATCTGACGATGAAGAAGCACCAACTGCACAATTCTCTGAATCAAGATCTACAACGCATCCAGATAATAGTGTTGCCCAGAGTTGCTCTAGAGATGATGCAAGCAGTGCCCACCGCAATGATGTTGAAAGAGGAAATACAGAAAGCAGTTAG 666 0.458 MSQESSVSDPSSACCSRSDHLDSASAELKLYRAFIFSVPIFFTFILLFLFYVFYLRPRRVDWSSLRMRAFATAEDNDGNSRPLELGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQTEDKLQQIPACGHTFHMSCIDLWLTNHSTCPLCRLSLLAYAKSSTEASNLQRPSDDEEAPTAQFSESRSTTHPDNSVAQSCSRDDASSAHRNDVERGNTESS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1218 221 SUPERFAMILY RING/U-box 95 158 - -
Lele12g1218 221 MobiDBLite consensus disorder prediction 165 221 - -
Lele12g1218 221 FunFam RING-H2 finger protein ATL7 77 158 - -
Lele12g1218 221 Pfam Ring finger domain 110 153 IPR001841 -
Lele12g1218 221 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lele12g1218 221 PANTHER OS11G0150450 PROTEIN 42 202 - -
Lele12g1218 221 SMART ring_2 111 152 IPR001841 -
Lele12g1218 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 158 IPR013083 -
Lele12g1218 221 MobiDBLite consensus disorder prediction 205 221 - -
Lele12g1218 221 MobiDBLite consensus disorder prediction 165 204 - -
Lele12g1218 221 CDD RING-H2_EL5_like 110 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1218 Lele-ChrLele12 19146087 19149194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1218 23 220 C3H Transcription Factor Family AT4G10150 52.913 1.82e-66 203