Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1185 ATGGCTTCACATCGCTGCACTTTCTTCTCAATCCTTCTTGCTTTTTCAGTAATCTTCCACATAGCCATTGCTGCTTCTTCATCATCTTCTTCTTCCTCCATCTCCACTAAAACCCTAAAAACCTACAAGATTTTCATCAAAGGGTACTGTAATTCCACCACATACCCTACAAATTGCTACAAGTTTCTCTCTCCTTATGCCTCTGTGATCAAATCAAGCCCTCTTATTCTCACTAGGGCCTCCATTTATATTGCTCTGAAAGAAACCAGCAAGTCGTCTTATGCACTCAGATCTCTGTCCAACGTCAAGGGTCTCACTCGCAATGAAACCCTAGTTTTGAAGGATTGTCTCGAGAACGTTTATGATTGCCTGTATAGGGTCAAGGATTCTGCCATGTCTGTGAAGGGGTTGAAAGGCGCCGGTAACTCCTCCGACCATGGTGAGGCCTTTGGGTGGAGTAACATAAAGACGTGGATGAGTGCCGCCATTACAAGTTATACAACTTGCACAGACGAGTTTGAAGAGATGAAGATTAGAGCTTCGTTGCAGGAGAAGATCTCAAGTAGGGTCACAAAAGCTCAAGACATGGTTAGCAATGCTCTCTCAGTTGTCAACAAGTTCACATACTATTGA 633 0.436 MASHRCTFFSILLAFSVIFHIAIAASSSSSSSSISTKTLKTYKIFIKGYCNSTTYPTNCYKFLSPYASVIKSSPLILTRASIYIALKETSKSSYALRSLSNVKGLTRNETLVLKDCLENVYDCLYRVKDSAMSVKGLKGAGNSSDHGEAFGWSNIKTWMSAAITSYTTCTDEFEEMKIRASLQEKISSRVTKAQDMVSNALSVVNKFTYY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1185 210 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 208 IPR035513 -
Lele12g1185 210 CDD PMEI-like_3 50 208 - -
Lele12g1185 210 Pfam Plant invertase/pectin methylesterase inhibitor 45 202 IPR006501 GO:0004857
Lele12g1185 210 SMART PMEI_2 41 203 IPR006501 GO:0004857
Lele12g1185 210 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 206 IPR006501 GO:0004857
Lele12g1185 210 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 207 IPR035513 -
Lele12g1185 210 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1185 Lele-ChrLele12 18896494 18897126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1185 21 208 Carbohydrate Esterase AT1G53830 26.289 1.32e-10 58.2