Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1179 ATGGGTCGATGTCTGTTAATATTATTCTTAAGTTTCTTTCTCTTAGCCTGTCTTGTTCCAACAGCCACATCGAGATTAAGAAGATCGAAACAGTCTTTTTCTAAGAACATTCAATGGTGGTGCGATCGAACCCCACATCCAGAACAATGCAAATTCTACATGATGAGCCCCACCCGCCATGGCCACAGAGTGAAGCACAAGTCCAAGTTCAGAGTCAAGCTAGTTCAGTTAGCTCTGAATCAAGCTCAATACATGAAATATGAAGCTCATGACTTTGCCCAGAATGGCGAAGCTCAGAAGCTGAAAGCTGTGTTCGGTGATTGCTTTAAGCTCTACGATAACACCATCTTCCACCTGAACCGAACCCTGGAAGGGCTCGGATCGAAACGTCGTCGTCAAGGTTGCTCCAGCTTGGACGCTCAGACATGGCTGAGTACTGCTCTCACTAACATTCAGACATGCAAGAACGGAGCTAAAGACTTAAAGCTTACGGTTCCACAATTTACAGAGCCCAATACTGTGTGTTACAATGTCACCAAGATGATAAGCAATAGCTTGGCGATAAACGCGGCGTTTCTGAAAAGATCTGAGAGAGAAGAACTCAGTACTGGGAATATTAATGGATTTCCCAGGTGGTTTTCGAGGCGCGAGAGGAAGCTGGCGACAGTGTCCGCGTCGAAGATAAGGGCGAATCTGGTGGTGGCAAAGGACGGTTCGGGGCATTTCAGGACGGTGCAGGCGGCGATAAATGCAGCGGCGAGGAGGAGGGTGAAGACGAGGTTTGTGATAAGAGTGAAGAGAGGGGTTTATCATGAGAACATTGAAGTTGATAAGAGTAACAGTAATATAATGCTGATCGGTGATGGTTTGAGATATACTGTGATTACGAGTTCTAAGAGTACTTCAGATGGCATTACCACCTATAGCACCGCCACTGCTGGCATAGATGGGCCTAACTTCATTGCACGTGATATATCATTTAGGAACGACGCTGGTCCTCGCAAGGGACAAGCAGTGGCACTCCGATCAGCCTCCGATCTCTCTGTCTTCTACCGATGTGGCATTATAGGTTATCAAGACACAGTCATGGCTCATGCACAGCGTCAATTCTACAAACAATGCTACATCTTTGGCACCGTAGATATCATCTTCGGTAATGCCGCTGCAGTTTTCCAAAATTGCGTAATTCTCGTGAGGAGGCCATTACCAGGCCAGGCCAATATGATCACGGCCCAAGGTCGAGGCGACCCGTTCCAGAACACGGGTACCTCGTTACACAATTGCATAATTAAAGCCGCACCGGACCTCAAGCCTGTCATTGGCTCCGTCACGACCTACCTAGGCCGGCCCTGGCAAGAATACTCTAGGGTGGTGGTAATGAGGTCCTACATGGACTCCTCGGTAAGCACATTGGGCTGGTCCAAATGGGGAAATGGTAATTTTGCTTTAAATACATTGTATTTTGGGGAATATAAGAACTTTGGACCCGGTTCATCCACAAGGAATAGGGTTAAATGGAAGGGCTATCATGTCATAAGGAGTGCGACTGAAGCATCTAGCTTCACTGTGAATGGCCTCATTGCTGGGAGTACATGGTTGCCTTCAACTGGAGTTCCATTTACTTCTGGTTTATAG 1635 0.4716 MGRCLLILFLSFFLLACLVPTATSRLRRSKQSFSKNIQWWCDRTPHPEQCKFYMMSPTRHGHRVKHKSKFRVKLVQLALNQAQYMKYEAHDFAQNGEAQKLKAVFGDCFKLYDNTIFHLNRTLEGLGSKRRRQGCSSLDAQTWLSTALTNIQTCKNGAKDLKLTVPQFTEPNTVCYNVTKMISNSLAINAAFLKRSEREELSTGNINGFPRWFSRRERKLATVSASKIRANLVVAKDGSGHFRTVQAAINAAARRRVKTRFVIRVKRGVYHENIEVDKSNSNIMLIGDGLRYTVITSSKSTSDGITTYSTATAGIDGPNFIARDISFRNDAGPRKGQAVALRSASDLSVFYRCGIIGYQDTVMAHAQRQFYKQCYIFGTVDIIFGNAAAVFQNCVILVRRPLPGQANMITAQGRGDPFQNTGTSLHNCIIKAAPDLKPVIGSVTTYLGRPWQEYSRVVVMRSYMDSSVSTLGWSKWGNGNFALNTLYFGEYKNFGPGSSTRNRVKWKGYHVIRSATEASSFTVNGLIAGSTWLPSTGVPFTSGL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1179 544 PANTHER PECTINESTERASE 14 534 - -
Lele12g1179 544 CDD PMEI-like_3 39 194 - -
Lele12g1179 544 Pfam Pectinesterase 231 529 IPR000070 GO:0030599|GO:0042545
Lele12g1179 544 SMART PMEI_2 32 188 IPR006501 GO:0004857
Lele12g1179 544 SUPERFAMILY Pectin lyase-like 228 543 IPR011050 -
Lele12g1179 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
Lele12g1179 544 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Lele12g1179 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 189 IPR006501 GO:0004857
Lele12g1179 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 192 IPR035513 -
Lele12g1179 544 Pfam Plant invertase/pectin methylesterase inhibitor 36 188 IPR006501 GO:0004857
Lele12g1179 544 FunFam Pectinesterase 225 544 - -
Lele12g1179 544 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lele12g1179 544 Gene3D - 224 544 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1179 Lele-ChrLele12 18853641 18855927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1179 34 544 Carbohydrate Esterase AT5G51500 56.809 0.0 592