Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1178 ATGCATGTCTGCCCGCTCTCATGATTCAAAAAGAAAATGGAGAATATGAATTCTTTTTCTTATGTTCCACCGGGATTTAGGTTCCATCCCACAGATGAAGAACTTGTTGATTACTACCTGAGGAAGAAGGTGACTTCAAGAAGGATTGACCTTAATGTCATCAAAGATGTCGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGGATAGGAACAGAAGAGCAAAATGAGTGGTACTTTTTTAGTCATAAAGACAAGAAATATCCAACAGGGACTCGAACAAATAGAGCCACAGCTGCAGGATTCTGGAAAGCAACAGGAAGAGATAAGGCTATCTATTCCAAGCATGACCTCATAGGTATGAGGAAAACCCTAGTTTTCTACAAGGGTCGAGCCCCTAATGGACAGAAATCTGATTGGATTATGCATGAGTATCGCCTCGAAACCGATGAAAATGGCACCCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAATAACAACCATAAGGAAAGTGAGTGAGCATGACTCTTCTTGTTGGTATGATGACCAACAAGTCTCAACTTTCATGCAAGACTTGGACTCTCCAAAGCAACAAAATCCTCAACAACCTAATTCGATGTACCACCAAATCCCTATCATCAATAATAATTATCCTTGCAAGAAAGAGATGGATCATCCTCACAACATGCCTTTGCTTCGCCACCTTCAAACTCGTCACCACTTCCTCCCTCAGCTCCCGCTTCTCGATTACCAGAACCCAAAATTGCTTCAATCTCCAGCTGTAAACCCTACCAACAACAACAACAACTTAATGGCACCATATGGTCTTGATGTGATGAACCATGATCAGCAAACTTTTCAGGCTGCTGTTTATGGCGGTAGTAGTAGCCAAGAACAAGTGGCGGCGGACGATGAACAAGTGACTGATTGGCGAGTACTCGACAAGTTTGTCGCTTCACAACTTAGTCAAGAAGATGTTCCTAGTAATAACAAGGACCACAACAACAATAATAATGCAGGCACAAGCAGCAGCAGCAACAATATTTTTCAGGGCACCATGGAGAATATTGCTAGCAGTGTACAATTCAGAGTATCATCAAATTTGGAAAAGCAGCAAGAGATGGTTCCTGAAAATGCCTCAAGTTGCCCAATTGATTTGTGGAAATAG 1191 0.4215 MHVCPLSXFKKKMENMNSFSYVPPGFRFHPTDEELVDYYLRKKVTSRRIDLNVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRITTIRKVSEHDSSCWYDDQQVSTFMQDLDSPKQQNPQQPNSMYHQIPIINNNYPCKKEMDHPHNMPLLRHLQTRHHFLPQLPLLDYQNPKLLQSPAVNPTNNNNNLMAPYGLDVMNHDQQTFQAAVYGGSSSQEQVAADDEQVTDWRVLDKFVASQLSQEDVPSNNKDHNNNNNAGTSSSSNNIFQGTMENIASSVQFRVSSNLEKQQEMVPENASSCPIDLWK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1178 396 MobiDBLite consensus disorder prediction 329 358 - -
Lele12g1178 396 FunFam NAC domain-containing protein 31 175 - -
Lele12g1178 396 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 327 - -
Lele12g1178 396 Pfam No apical meristem (NAM) protein 23 150 IPR003441 GO:0003677|GO:0006355
Lele12g1178 396 ProSiteProfiles NAC domain profile. 22 171 IPR003441 GO:0003677|GO:0006355
Lele12g1178 396 SUPERFAMILY NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Lele12g1178 396 Gene3D NAC domain 31 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1178 Lele-ChrLele12 18838063 18840682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1178 16 396 NAC Transcription Factor Family AT1G12260 52.261 1.87e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele12g1178 NAM 6.4e-38 No_clan