Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1172 ATGGACCTGAAGTCAAATCATACTCCTGTTCTTACTGAAGCTGCACCCATAACAAAATCGAGATTGGGTGGGCATTCCAGTCTGTTGCCTTATTCTCCTACAGGGGCAGCTTTTCCACCTGGCCTGCTTCTGACAATCCCTAGGAAGAAGACAGGAATTCTTGATGATGTTCGTTCTAGTGGGTGGCTGGATGCCATGAAATCATCTTCTCCTACAGCCAAGAAGATAACAAAGGATGTTAATCATGGTTTCACACCATCTGATGCTGATAGTGCTTACAGTACCTGGCTGCTAAAGTATCCGTCAGCACTTGCGTCTTTTGAGCAAATTGCAAACTATGCAAAAGGCAAGAGAATAGCATTGTTTTTGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGAATGTGCTTTCATGTCTGACAGTATGCGCGCTGCTGTGAAAAAAGTGGCAGAGCTCTTTCCCACGGCAATAATTAGTGGACGAAGCCGTGACAAGGTATATGAATTTGTAGGACTAACTGAACTCTATTATGCTGGTAGCCATGGGATGGACATCATTGGTCCTGTCAGACAATCTGTATCTGATGACCATCCTAATTGCATTAGGTCTACTGACAATCAGGGAAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCTTGCCCATGATTGATGAGGTGTTTTGTTCCCTTATTGAGTGTACAAAAGACATTAAAGGAGCAAAAGTTGAGAGCAATAAATTTTGTGTCTCTGTACACTATCGCAACGTAGAGGAGAAGAATTGGAAAATAGTGGGGCAAAGAGTCCTTGATATTCTGAAGGACTATCCACGTTTGAGATTAACCCATGGGCGCAAGGTTTTAGAGGTCCGACCAGTGATCGATTGGGATAAGGGGAAAGCCGTCACATTTTTACTCGAGTCACTTGGGCTTAGCAACTGTGATGATGTGCTCCCTATATATGTTGGAGATGATCGGACTGATGAAGATGCTTTTAAGGTTTTGAGGGAGGGAAATAAAGGTTATGGCATCCTAGTTGCTTCTGCACCCAAGGAAAGCAATGCCGTCTACTCTCTTCGTGATCCATCAGAGGTGATGGAATTTCTCAAGTCTCTTGTGGTTTGGAAGTCAGGCCTCCTTAAAAGTTACATATAG 1164 0.4313 MDLKSNHTPVLTEAAPITKSRLGGHSSLLPYSPTGAAFPPGLLLTIPRKKTGILDDVRSSGWLDAMKSSSPTAKKITKDVNHGFTPSDADSAYSTWLLKYPSALASFEQIANYAKGKRIALFLDYDGTLSPIVDNPECAFMSDSMRAAVKKVAELFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIIGPVRQSVSDDHPNCIRSTDNQGKEVNLFQPAAEFLPMIDEVFCSLIECTKDIKGAKVESNKFCVSVHYRNVEEKNWKIVGQRVLDILKDYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLSNCDDVLPIYVGDDRTDEDAFKVLREGNKGYGILVASAPKESNAVYSLRDPSEVMEFLKSLVVWKSGLLKSYI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1172 387 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 380 IPR044651 GO:0004805|GO:0005992
Lele12g1172 387 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 121 339 IPR006379 -
Lele12g1172 387 FunFam Trehalose 6-phosphate phosphatase 119 208 - -
Lele12g1172 387 FunFam Trehalose 6-phosphate phosphatase 220 296 - -
Lele12g1172 387 FunFam Trehalose 6-phosphate phosphatase 226 385 - -
Lele12g1172 387 SUPERFAMILY HAD-like 120 377 IPR036412 -
Lele12g1172 387 Pfam Trehalose-phosphatase 122 366 IPR003337 GO:0003824|GO:0005992
Lele12g1172 387 CDD HAD_TPP 120 370 - -
Lele12g1172 387 TIGRFAM T6PP: trehalose-phosphatase 116 376 IPR003337 GO:0003824|GO:0005992
Lele12g1172 387 Gene3D - 119 212 IPR023214 -
Lele12g1172 387 Gene3D - 228 382 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1172 Lele-ChrLele12 18802566 18804860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1172 113 375 Trehalose Biosynthesis Gene Families AT1G70290 26.429 1.62e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0079 09 530806 533310 Lele12g1172 12 18802566 18804860 hybridization
Lele10g0080 10 551672 563598 Lele12g1172 12 18802566 18804860 hybridization