Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1171 ATGAAAACTAGCTTGTTAGGCAAGGAGAGTAAATTTGTGGAAGGAATTCTGGATAGTGTTCATACATTTTCTTCTGTTGGAGACCTTGGAGTGAAGCACAATGTGCAACTTTTGATTGAGAAATCACTCATGGCCGTTATAGTGCATGGTTTAGTGCAAAAGTTACAAATGCATGGTTTAGTGCAAGAAATGGGAAGAGAAATTGTTCGTTATAAATCCCCTTATAAGCCAGAAGAGTGGAGTAGATTATGGGATTTTAATGATATTCATGGTGTTATGCAGAATGACACGGTAAGTTGCACTCTTCGTTCTTATTGGCGTCTAACGTTCCAGCCTCTGGTGGAAGCAGTCATGGAGAGTGCCTTTGCAAGTGCTTCTGCAATCACAGACCAGAGGCAAAAAATAGAGCAGTATAAACAAATTCTTTCTGCTGTTATTGCATCAAATGACATCATTCAGGCAATGAGATTTATAGATCACATGTTGTCTGATGTTGTTCCATTAGTAGTATCACGGCAACTTTTGCAGACCTTTGCCCAAGAATTGGGAAGATTGCAGCCGGAAACACAGAAAGAGATTGCCCATTATGCTCTTGCTCAGATTCAGCCTCGTGTTGTGTCATTTGAAGAGCAGGTTTTAATTATTAGAGAGAAACTTGCAGAGTTATATGAATCTGAGCAGGAATGGTCAAAAGCAGCTCAGATGCTCAGTGGCATTGATCTTGATTCTGGAATGAGGTTGATTGATGATACATTCAGGCTGTCCAAGTGCGTCCAAATTGCTCGTTTATATCTTGAGGATGACGATGCTGTCAATGCCGAAGCATTTATTAATAAAGCATCATTCTTGGTTAGCAGTAGTCAGCAAGAAGTACTGAATTTACAGTACAAGATTTGTTATGCAAGGATTTTAGATTTAAAGAGGAAGTTCTTGGAAGCAGCCTTACGATATTATGATATATCTCAAATTGAAAAGAGGCAAATAGGAGATGAAGTGATAGATGAAGATGCACTTGAACAAGCTTTATCTGCTGCTGTTACATGTACAATTTTGGCAGCTGCAGGACCTCAACGTTCTCGTGTTCTTGCTACATTGTATAAGGTGTACTTGGAGAGAATTTTGAGAAAGCCCGAAATTGATGCATTTGCAGAAGAATTGAAAGCACACCAGGTTATATCTGCATACTTTGTATTTTGTTTTTGTTTTGAGGCCATACACTGTATGCCTGAGGATTTGCTTGTCCTACAGAAAGCCCTTCTTCCAGACAATTTTACTGTGCTGGACCGTGCAATGATTGAGCATAATCTACTAAGTGCAAGCAAACTTTACACAAATATTAGCTTTGATGAATTAGGAACACTGTTGGGAATTCCCCCACACAAGGCTGAGAAGATAGCATCAAGAATGATTTACGAGGATCGTATGAGGGGATCTATTGATCAGGTTGAAGCTGTCATTCATTTTGAGGATGACACTGAAGAGTTACAACGATGGGACCTGCAGATAGCTGATTTAGTATCAAACCGGGTTTGCCCCCGAGGCTTTATTTAG 1551 0.3978 MKTSLLGKESKFVEGILDSVHTFSSVGDLGVKHNVQLLIEKSLMAVIVHGLVQKLQMHGLVQEMGREIVRYKSPYKPEEWSRLWDFNDIHGVMQNDTVSCTLRSYWRLTFQPLVEAVMESAFASASAITDQRQKIEQYKQILSAVIASNDIIQAMRFIDHMLSDVVPLVVSRQLLQTFAQELGRLQPETQKEIAHYALAQIQPRVVSFEEQVLIIREKLAELYESEQEWSKAAQMLSGIDLDSGMRLIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKICYARILDLKRKFLEAALRYYDISQIEKRQIGDEVIDEDALEQALSAAVTCTILAAAGPQRSRVLATLYKVYLERILRKPEIDAFAEELKAHQVISAYFVFCFCFEAIHCMPEDLLVLQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEELQRWDLQIADLVSNRVCPRGFI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1171 516 ProSiteProfiles PCI domain profile. 309 493 IPR000717 -
Lele12g1171 516 FunFam COP9 signalosome complex subunit 4 417 497 - -
Lele12g1171 516 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 422 505 - -
Lele12g1171 516 Pfam PCI domain 370 489 IPR000717 -
Lele12g1171 516 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 119 507 IPR040134 -
Lele12g1171 516 Gene3D - 419 496 IPR036388 -
Lele12g1171 516 SMART PINT_4 422 505 IPR000717 -
Lele12g1171 516 SUPERFAMILY "Winged helix" DNA-binding domain 420 494 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1171 Lele-ChrLele12 18776403 18783119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1171 38 97 WRKY Transcription Factor Family AT4G12020 43.333 6.00e-06 47.4