Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1162 ATGGTGTCAGGGTCCGGCGTGTGCGCGAAGCGCGTGGTTGTAGACGCGCGCCACCACATGCTAGGTAGGCTGGCTTCTATCGTGGCCAAGGAGCTTCTCAACGGCCAGAAGGTGGTGGTGGTGCGGTGCGAGGAGATCTGCATCTCCGGTGGCTTGGTCCGTCAGAAGATGAAGTACATGCGATTCCTCCGTAAGCGGATGAATACTAAGCCTTCTCATGGTCCTATCCACTTTCGCGCCCCTTCCAAGATTTTATGGCGCACTGTTCGTGGAATGATACCGCATAAGACAAAGCGTGGGGCAGAAGCTCTTGCAAGATTGAAGGTCTATGAAGGCATACCTCCCCCATATGACAAAACGAAGAGGATGGTTGTCCCTGATGCCCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGCTTGGTGGGTAAATTGTCTTCCGAAGTTGGATGGAACTATTATGATACCATCCGGGAATTGGAGAAGAAGAGAAAAGAGAGAGCACAATTGGTTTATGAGAAGAAGAAGCAGATTACTAAATTAAGGTTGAAGGCTGAGAAAATTGCCGAGGAGAAGCTTGGTTCTCAACTGGAGATCCTAGCTCCAGTCAAGTATTGA 621 0.4992 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKILWRTVRGMIPHKTKRGAEALARLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIRELEKKRKERAQLVYEKKKQITKLRLKAEKIAEEKLGSQLEILAPVKY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1162 206 PANTHER RIBOSOMAL PROTEIN L13 2 181 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Lele12g1162 206 FunFam 60S ribosomal protein L13a 155 206 - -
Lele12g1162 206 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Lele12g1162 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele12g1162 206 Gene3D - 156 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1162 Lele-ChrLele12 18733518 18734784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1162 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 87.379 6.40e-138 382