Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1159 ATGATTTGCGAAAGGTGCTTTGCTAACGGAAAAGCTAGGGGAGGGCATATGAGGTCTCACTTTGCCAAACTTCCCGTCCCTCCTAAGCCTGCTTCAATACCTCCAATTTCAGATCACGTGACTTCAGAAATATCCAAAGTTGATGTTGATGGTGGTTCATCCTCAACCCATCAGCGTTCGATCTCCTTTTCTTCTCTAAGAAGTCATCCGAGGATGAAATCGCCTACTAAACAGAACTTTCACTATGTGAATCAAGACTTTGTAGCAAGAGTTTCGAACCACAGCGGTGACCAAGGAAGGAAATCAGATCAATCTTACCTGTCTGGAAAGAGGTCTAAACGTTGCCGTAAAATGGGTGATGTAACAAGAGCATTAACGTTGCCGTCCAAGACAAAACTTGATGAAGACAATCCAAACCAAACAAGTTTGATCTTTGATTCTTACTTTCTAGCTAGAGATGCTGCTTTGACTCTCGTATTGCTTTCCAAGGCGAAATGGCCCGAAGGAAAAGAATTGATCAAGAAGAAACAAAAAGTGAAGGATGCGAATGAACAAGAAGACTCATATGTGGAGGTTCACTCTAATGGCGGAATGTTCGTGTGCGAGATGTGCAAGAAAGTTTTCGGATCTTATCAAGCACTTGGTGGGCACAAATCAAGCCACAAAAAATTCATCAAGAATGACCAATTTGAGGTAGATGGTGAATTTGATGAAGAAAATGGGGATGATGGTTATTGGGGGAACAATAATAATGATGTTCTTGAAGATCCAAAAGTGTTGAAGTTCCCCCACTGCTCCAAAGTGTTTGGTTCCAGCCAAGGACTTGGAAGACACAAGAAGATACACTCTCCCAATGCTATGAAATTTGGGGCTAATGACATAGATCTTAACTCACCTGCTCCAACGGAAGATTATTGA 918 0.4194 MICERCFANGKARGGHMRSHFAKLPVPPKPASIPPISDHVTSEISKVDVDGGSSSTHQRSISFSSLRSHPRMKSPTKQNFHYVNQDFVARVSNHSGDQGRKSDQSYLSGKRSKRCRKMGDVTRALTLPSKTKLDEDNPNQTSLIFDSYFLARDAALTLVLLSKAKWPEGKELIKKKQKVKDANEQEDSYVEVHSNGGMFVCEMCKKVFGSYQALGGHKSSHKKFIKNDQFEVDGEFDEENGDDGYWGNNNNDVLEDPKVLKFPHCSKVFGSSQGLGRHKKIHSPNAMKFGANDIDLNSPAPTEDY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1159 305 MobiDBLite consensus disorder prediction 47 75 - -
Lele12g1159 305 Gene3D Classic Zinc Finger 172 286 - -
Lele12g1159 305 ProSitePatterns Zinc finger C2H2 type domain signature. 201 221 IPR013087 -
Lele12g1159 305 SUPERFAMILY beta-beta-alpha zinc fingers 198 282 IPR036236 -
Lele12g1159 305 SMART c2h2final6 199 221 IPR013087 -
Lele12g1159 305 SMART c2h2final6 260 282 IPR013087 -
Lele12g1159 305 MobiDBLite consensus disorder prediction 46 75 - -
Lele12g1159 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 221 IPR013087 -
Lele12g1159 305 MobiDBLite consensus disorder prediction 91 119 - -
Lele12g1159 305 MobiDBLite consensus disorder prediction 104 119 - -
Lele12g1159 305 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 304 IPR044303 GO:0006355
Lele12g1159 305 Pfam C2H2-type zinc finger 199 223 - -
Lele12g1159 305 Pfam C2H2-type zinc finger 265 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1159 Lele-ChrLele12 18722160 18723077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1159 2 304 C2H2 Transcription Factor Family AT3G60580 28.395 3.86e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g1159 zf-C2H2_6 3.3e-10 CL0361