Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1149 ATGATTGATTATGTTGGGTGCAACATAATAATCATCATGTCATTAAGAAATGGTGTGGATGATGATGAAGAACAAGGAAGATGGGAAAATCTGCCACCAGAATTGCTTGGGGACATAACAAAGAGAGTGGAAGAGACTGAGACATGTTGGCCTGAAAGTGTTATTCTCCAGGGGCTCGAGATTCTCCAATTCAATGCTATATGGAACAGAGAAACTTCTATTTATTTGTTGTACTTGGATCCAGAGCCATACTTCATGATATATTGGCATCTGCTAATTTCCAGCTTGTTTCTGCCGATGAAGATGAAGAACAAGAGCAAGGAAAGGGGATTACCTTTCCTTGTTAATAATGTGTCTTTACGTGAAAACAACGTTGTTGGTACCATTACATACAAGATCACCAAGATCAAAAGGTTTGGGGGCGCAATGGAGGAAGGTCAAAGAAAAATGAAGTGCAGCATCATGATGAAGAAGATGAACTCATCCAACTCTATTCTGAAACTTGAAATAAAGAATCCCAAATGGCATGCCTACTACCTATTTACATTACAGTGGCGCCTCAACTTCAGACATTATGGTACAATACGGCCATTTGCCAATTTCCAGCTTGTTTCTACTCATGATGAACAAGAAAAGATAATATTGGAATTTGCTAAGATTGGTGAAGACTTGTTTATTATGGATTACTGTTATCCACTCTCAGCATTTGAAACCTTCTCCATCTGCCTCAGCAACTTTGTCGCTGACGTCCCAACCTGCTTCTTCGATCGATTGAGATTATAA 783 0.3921 MIDYVGCNIIIIMSLRNGVDDDEEQGRWENLPPELLGDITKRVEETETCWPESVILQGLEILQFNAIWNRETSIYLLYLDPEPYFMIYWHLLISSLFLPMKMKNKSKERGLPFLVNNVSLRENNVVGTITYKITKIKRFGGAMEEGQRKMKCSIMMKKMNSSNSILKLEIKNPKWHAYYLFTLQWRLNFRHYGTIRPFANFQLVSTHDEQEKIILEFAKIGEDLFIMDYCYPLSAFETFSICLSNFVADVPTCFFDRLRL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1149 260 SUPERFAMILY Tubby C-terminal domain-like 122 246 IPR025659 -
Lele12g1149 260 Pfam Tub family 147 246 IPR000007 -
Lele12g1149 260 Gene3D Tubby Protein; Chain A 101 250 IPR025659 -
Lele12g1149 260 PANTHER TUBBY-RELATED 129 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1149 Lele-ChrLele12 18619413 18621086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1149 126 246 TUB Transcription Factor Family AT1G53320 34.667 2.70e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele12g1149 Tub 8e-24 CL0395