Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1140 ATGTCTTCCAGGTTTATAGCAATTTCGGCTGTTTTTACAGCTTTGAGCTTCGTGGGTGTACAATTTGGCTCGGAGTTGACATTCAGTAAACTGAAATCAGAAGGAATTATCGGCAAGAATTTAATTCACCTGGATAAGGAGAATGCCAATAATGCCATTGAGTCGTTTTTGGGGTCTCTGCACTTCTTGCATAAGATGATTTCTTCTTCTTTTGGCCGTGAACTGACTATATTTTTTTCTGAGTTGTATCCTACTGAAATTCGGAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTACCAATGATAGTGCCTGCATCAATATATCAGGCAGGTCTATGGTCTTGTTGGTTGATAGTACTATGTTCTTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGACTGAATGCATCTCCATCTGCCAGACCCTGGACATATGGCCGTGTATATTCAGCGTTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATGATATATAAAACACACCCATCCTCTATGCTTCTGTTGCTATTCTATGAGCCTCTCAGTATCGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGGTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATAACACTGATAGTGCAAGGTCAAAGCTGTTTCACACATTAGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTTTTACTAGACATGGCAACTTCTTTTACAGCTCTTGGCCATTACTTGCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGAACACTGCTAAGTGCTCTTATAAATCGCATAAGAGCCTATATCAGGTTAAGGACAGCTTTAGGTGCACTACATGCAGCTCTTCCTGATGCAACTACTGAGGAGCTACTATCATATGATGATGGATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAAAGTTAAACTGCAAACACCTTTTCCATCTTGCGTGTTTGAGATCTTGGTTAGATCAAGGATTGACAGAGATGTATACTTGTCCAACATGTCGGAAGCCACTCTTTGTTGGCCGGTCTCAAGATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAACCACCTGCACACCAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGTAGACATGCCACTGCTGCTGGATTATTTCCCAACCAGACACCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCCGGTCCATCTACTGCAATGAGATCAGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGTATCTGTTGGAGAAAATGCTCAGAATTCCCTTGAAGATACTGCCTGGAGCCTTTGGCCTATGAATCCTTCTCAGGCTTCTGCAAGCGGTTCACGGATTCCTCCTCCTCATGGGAGGTTCCCTGGAGGCTTTGATAATAATCTACATATGAGGAATGCCTTACGTTTGGCAAATGATAATCTGGCAAATATACTGGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCCGCGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1746 0.4255 MSSRFIAISAVFTALSFVGVQFGSELTFSKLKSEGIIGKNLIHLDKENANNAIESFLGSLHFLHKMISSSFGRELTIFFSELYPTEIRKLVECLINYVIYKGTFLPMIVPASIYQAGLWSCWLIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLMIYKTHPSSMLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACNNTDSARSKLFHTLAAGSLMEWKWSLIRNLGFLLDMATSFTALGHYLHIWWLHGIAFHLVDAVLFLNIRTLLSALINRIRAYIRLRTALGALHAALPDATTEELLSYDDGCAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGRSQDEASFNMRETSSEEPPAHQIGSGLDQPNTGRHATAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAMRSVGLGRVQMMMRHLVSVGENAQNSLEDTAWSLWPMNPSQASASGSRIPPPHGRFPGGFDNNLHMRNALRLANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSASVTVNNLLQM 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1140 581 ProSiteProfiles CUE domain profile. 541 581 IPR003892 GO:0043130
Lele12g1140 581 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 76 581 - -
Lele12g1140 581 SMART ring_2 333 374 IPR001841 -
Lele12g1140 581 FunFam E3 ubiquitin protein ligase RIN2 540 580 - -
Lele12g1140 581 Gene3D - 540 580 - -
Lele12g1140 581 Pfam Ring finger domain 333 375 IPR001841 -
Lele12g1140 581 MobiDBLite consensus disorder prediction 388 429 - -
Lele12g1140 581 SUPERFAMILY RING/U-box 319 381 - -
Lele12g1140 581 CDD CUE_RIN3_plant 542 579 IPR035667 -
Lele12g1140 581 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Lele12g1140 581 Pfam CUE domain 545 581 IPR003892 GO:0043130
Lele12g1140 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 385 IPR013083 -
Lele12g1140 581 FunFam E3 ubiquitin protein ligase RIN2 306 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1140 Lele-ChrLele12 18567990 18573424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1140 88 416 C3H Transcription Factor Family AT3G16090 26.781 9.16e-26 108