Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1127 ATGGCGGGAGGTAAAATCAAGAAGGAGAAAGGCAAGCCACAGCAGCAACACACGCCGTACCAAGGGGGTATATCGTTTCACAAGTCGAAGGGTCAGCATATCCTCAAGAACCCTTTGCTGGTCGATTCCATAGTCCAGAAATCCGGCATCAAAAGCACCGATGTCATCCTCGAGATCGGTCCTGGTACTGGAAATCTTACGAAAAAGCTATTGGAAGCTGGAAAGATGGTAATTGCTGTTGAGATTGACCCTCGTATGGTTCTCGAACTTCAAAGACGATTCCAGGGTACCCCTTACTCTAGCCGCCTTAAGGTTATTCAAGGTGACGTGCTTAAGACCGAACTTCCTTATTTTGACATATGTGTGGCAAACATTCCATATCAAATATCTTCGCCGCGGGCATTCAAGTTACTCAACCACCAACCTGCATTTTGGTGTGCAATTATTATGTTTCAGAGAGAATTTGCCATGAGACTGGTTGCTCAGCCTGGTGACAAACTCTATTGTCGTCTTACTGTGAATACGCAACTCCTTGCTCGGGTCTCCCACCTCCTCAAAGTTGGGAAAAACAATTTCCGACCTCCCCCGAAGGTTGATTCCTCTGTAGTGCGAATTGAGCCAAGGAAACCTCGCATTGAAGTTAAGCAGAAGGAATGGGATGGGTTTTGCAACTACAAGACTGTGCTATCACTAAAACTCTCACAAGAAGGTTTAACAGAGGAAACCGATACGAAAATGGACTTCTCTAGTTTTGACAACTCCATGGAAGATCAAGGCATGGGAATGGATGATGGATTAGATGAAGACGATGAAATGGAGATGGAGGGCGGGGACGGTGATGCGGAAGAGGTGCAATCTGAATTTAAGGACAAGGTTATGGGTGTTTTAAAAGAGGGAGATTTTGAAGAGAAGAGTTTGATCCTTTGTTCTGTGAAAACCCTAGCGCCGTCTCCTTCTCCTTCCTATTTAAATGTCTTGTTAGTGCAAACCTGTTTCTTTGCTTCTGCCGCTGTAAGTCTCCGCTCAAGTTCAATTCCAATGGCTTCAGAGAAGAAGCTAGCGAACCCTATGAGGGAAATCAAGGTCCAGAAGCTCGTTCTCAATATCTCAGTGGGCGAGAGTGGAGATCGTCTCACCAGAGCTGCTAAGGTGTTGGAGCAACTTAGTGGCCAGACACCAGTTTTCTCCAAAGCAAGGTATACTGTCCGTTCGTTTGGCATAAGAAGGAATGAAAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTCTGAAGGTGAAGGAATATGAACTGCTGAGAAGAAACTTCAGTGATACAGGGTGCTTTGGCTTTGGCATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCATCTACTGGTATCTATGGAATGGACTTCTATGTTGTTTTGGAGCGCCCTGGTTACCGTGTGGGACGTCGCCGCAGGTGCAAGTCACGTGTTGGGATCCAGCACCGTGTCACAAAGGAGGATGCCATGAAGTGGTTCCAAGTGAAATACGAAGGAGTGATCCTGAACAAAGCCCAAACAATCTTTGGTTAG 1587 0.46 MAGGKIKKEKGKPQQQHTPYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEIDPRMVLELQRRFQGTPYSSRLKVIQGDVLKTELPYFDICVANIPYQISSPRAFKLLNHQPAFWCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFCNYKTVLSLKLSQEGLTEETDTKMDFSSFDNSMEDQGMGMDDGLDEDDEMEMEGGDGDAEEVQSEFKDKVMGVLKEGDFEEKSLILCSVKTLAPSPSPSYLNVLLVQTCFFASAAVSLRSSSIPMASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQTIFG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1127 528 FunFam rRNA adenine N(6)-methyltransferase 26 211 - -
Lele12g1127 528 Gene3D Vaccinia Virus protein VP39 26 210 IPR029063 -
Lele12g1127 528 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 337 522 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lele12g1127 528 CDD AdoMet_MTases 56 138 - -
Lele12g1127 528 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 25 224 IPR011530 GO:0000179|GO:0006364
Lele12g1127 528 ProSitePatterns Ribosomal protein L5 signature. 385 401 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lele12g1127 528 Gene3D - 347 523 IPR022803 -
Lele12g1127 528 MobiDBLite consensus disorder prediction 1 23 - -
Lele12g1127 528 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 56 83 IPR020596 GO:0000154|GO:0000179|GO:0008649
Lele12g1127 528 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 26 300 IPR001737 -
Lele12g1127 528 SUPERFAMILY RL5-like 355 519 IPR022803 -
Lele12g1127 528 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 223 IPR029063 -
Lele12g1127 528 Pfam ribosomal L5P family C-terminus 412 510 IPR031309 -
Lele12g1127 528 SMART rADcneu6 40 209 IPR020598 GO:0000154|GO:0000179|GO:0008649
Lele12g1127 528 Pfam Ribosomal protein L5 355 408 IPR031310 -
Lele12g1127 528 Pfam Ribosomal RNA adenine dimethylase 25 224 IPR001737 -
Lele12g1127 528 FunFam 60S ribosomal protein L11 347 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1127 Lele-ChrLele12 18486840 18491500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1127 347 528 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.505 9.56e-125 361