Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1120 ATGTGTTCAGGTTCCCAAGTCTTTTTCTTTCTTCTTCCTCTCTTCCCCTTTTGGGCCCTTTTGACTTTACCCTTACTGGGTTCCACTACCAGAGGCATGTCAACAGTGAGAGATCCTGCTATAAAGCTATTTGGTAGAGATATTTCTGTGGATTCAACACGCAACACCGATTCGCCTCAAGTTATGAACAGGTATGATAAATCAACAATTGAAGGCAATGTTCCGTTTAGAACTGGCAAGCAGCAGAATCTTATTGAAGATGCAGATGGAAGCGTTTATGGAAGTCCTACTTTTGAAGTGGAGGCTAAAGTAGTTCATAGAACTAAGGACTACAAGGCTGGTAGTAGAGATATGGATCATCAAGAAAAAGTTTTCAAGAAACCAGATAAGGTGCTGCCTTGTCCTCGCTGCAACAGCTTGGAGACTAAGTTTTGCTATTTCAATAATTACAATGTTAATCAACCAAGGCATTTCTGCAAAAATTGCCAAAGATATTGGACAGCTGGGGGCATAATTAGAAATGTCCCCGTGGGGGCCGGAAAGCGCAAAAATAAACATTCGCCATTACCTGTTGGCCAAGATATATCATCTGTTGCCCACACGGACTCCAACTCTATTCCTACAGTTTCAAGACCTACCGGAGGAATGGGAAATAGTCCTAGAATTGGGGAAGAAGCTCCTCTTCGTGAATCCTTGGAAACTATGTTAAATCTAAAAGGCCAGAAAAAAACTGAAGTTGACTCCTCTACTGGTGATGATAGTGAGGAGCCTTCTAGGGATTTTGAATCCAGGGAAAATGAATGCTCAGCAAATGAAATTGAGCAGGTAGGTTTGCAACAACACTTGAATGGTTTTAATCCTCTACATCCACTTCATTATTATCCTGTACCTCCCTGGGCTTACCAATGGAACCCATGTTGGAACTCAATTTTATTTAGACCCAGTCCTGCTTATATGGGATCCGCAACCATGATGGCAGTCCCAGGTTTCACTGCACCAACAATGGAATTATCGGCAGTACCTTTTTATTCGAGTCCCCTGCCATGCTGGACTGGCCAGAAGGAAGAGTCTCCGTTTGCGGGGCCTACATTTAGTGGCATCCCATCACCGTCCTCTTCCACTAGCAGCAGTGATTGTTCTGGGACTAAGTCTCCAACCTTAGGAAAACATTCCAGAGATGTAAGTACTCAGGCAGGTGATGCAATGAGACAGAATCTTTGGGCACCTAAGACTCTGAGAATTAATGATCCAGAAGAAGCTGCAAAGAGTTCTATATGGTCTGCTTTTGGTACAAAGATTGAACAGAACAAACCGATTATCAAAGGCAGCGTTTTTAAATCTTTTGAACCTAAGTCGGAAGGTGCAAGTTCTCATATTTCAAATACTGATCAAATTCTGAGCGCAAACCCTGCTGCTTTCTCTCGCTCAGGATCATTTCAGGAAAGAATGTAA 1452 0.4277 MCSGSQVFFFLLPLFPFWALLTLPLLGSTTRGMSTVRDPAIKLFGRDISVDSTRNTDSPQVMNRYDKSTIEGNVPFRTGKQQNLIEDADGSVYGSPTFEVEAKVVHRTKDYKAGSRDMDHQEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGIIRNVPVGAGKRKNKHSPLPVGQDISSVAHTDSNSIPTVSRPTGGMGNSPRIGEEAPLRESLETMLNLKGQKKTEVDSSTGDDSEEPSRDFESRENECSANEIEQVGLQQHLNGFNPLHPLHYYPVPPWAYQWNPCWNSILFRPSPAYMGSATMMAVPGFTAPTMELSAVPFYSSPLPCWTGQKEESPFAGPTFSGIPSPSSSTSSSDCSGTKSPTLGKHSRDVSTQAGDAMRQNLWAPKTLRINDPEEAAKSSIWSAFGTKIEQNKPIIKGSVFKSFEPKSEGASSHISNTDQILSANPAAFSRSGSFQERM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1120 483 MobiDBLite consensus disorder prediction 358 414 - -
Lele12g1120 483 Pfam Dof domain, zinc finger 129 186 IPR003851 GO:0003677|GO:0006355
Lele12g1120 483 ProSitePatterns Zinc finger Dof-type signature. 134 170 IPR003851 GO:0003677|GO:0006355
Lele12g1120 483 MobiDBLite consensus disorder prediction 178 224 - -
Lele12g1120 483 ProSiteProfiles Zinc finger Dof-type profile. 132 186 IPR003851 GO:0003677|GO:0006355
Lele12g1120 483 MobiDBLite consensus disorder prediction 245 268 - -
Lele12g1120 483 MobiDBLite consensus disorder prediction 450 483 - -
Lele12g1120 483 MobiDBLite consensus disorder prediction 238 268 - -
Lele12g1120 483 MobiDBLite consensus disorder prediction 453 483 - -
Lele12g1120 483 MobiDBLite consensus disorder prediction 364 402 - -
Lele12g1120 483 MobiDBLite consensus disorder prediction 190 215 - -
Lele12g1120 483 PANTHER CYCLIC DOF FACTOR 2 36 482 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1120 Lele-ChrLele12 18427994 18431217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1120 104 481 C2C2-Dof Transcription Factor Family AT5G39660 36.919 9.65e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele12g1120 zf-Dof 1.1e-31 No_clan