Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1118 ATGAAGAGGTCTTGCAGTGCTTCGTCTTCATCTCCATCTTCTTCTTCGTCTTCTTCTCCCGAGTTTCTGAATCCTGACCAGACAGAAGCGCGAGGCAGAGCGAGTAATAAGCGAGCCAGAAGGAGTGGCAATGGTGATGGTAATAATGATGATAATAAGTCGAAGAAGGTGAAATCCGTAAGCTCTAGCTCTTCCGCCATTAATGGTGGGCGAAGAAGTTCCGTTTACAGAGGAGTCACCAGGCATCGATGGACTGGGAGGTTTGAAGCTCATCTCTGGGATAAGAGTTGCTGGAACAGCCTCCAGAACAAGAAGGGACGACAAGGGGCTTATGACAATGAAGAAGCTGCTGCTAGAACCTATGATCTTGCTGCTCTTAAATACTGGGGAAGATATTCAACGTTGAATTTCCCGATTGAAATATACACCAAGGAGCTTGAGGAAATGGACAAGGTCACAAAAGAAGAGTACTTAGCTTCATTGCGACGGCAAAGCAGTGGATTTTCTAGAGGGGTTTCTAAGTATCGAGGGGTAGCTAGGCATCACCATAATGGTCGATGGGAAGCTCGGATCGGAAGAGTACTCGGCAACAAATATCTCTACTTGGGAACATATAGTACTCAAGAGGAAGCAGCTACAGCATACGACTTGGCAGCTATACAATACAGAGGCGCGAATGCAGTGACCAATTTTGACATTAGCAGATACATCGACAAGATCAACCTCATCCACCAGAACAGCAATGGCGAATCCCAAGAAGATCAAACTGTAATCGCAATACCATCACAAGTAGAAGAAGTAGGAGAAGATGAAGAAGAATCAACTCCTAATTCATCCTCCGAGTCCGAGTCCGACTCGGAAAATCTGCAGAACCAGAAGCAATCACCACAACAACAACTACATGACCTAGAAATCGAACCTGAAAATCCTCAATTTCAACCTAATCAGAACTCTCCACCGAACGACGAATCCTCCCCGGTCGCTCCTGTGGACCCTACTACTACGACCACCGATGAACAGGAGCTTCCATGGATATTCATGGATGGCGACGGATTCTCTCAGTTTCAAGTTCCAGATCTGCCTGATGGCGACTTACTGAGTGTGTTCGGTGATGGCGTAAGAAGATTCGACGACGACATTGGACTTCTCTTCAGGCCAGATCCTAAGGAGGGCGATTTCAACCTGGACGGGATTTTGAGCAGTCCGAGCTGCTACGGAGATCTGGCGATGGCGGATTCAACAAGAATGGTGGCGGGTGATGATGATTGTGGTGGGCAAGAGGAGTTGCCCTGTTCTGCAAAGTCTGCTTCTTGTTCACCAAACTCTTTGATTTCTTGTTCGGATTATACTTCATGA 1356 0.469 MKRSCSASSSSPSSSSSSSPEFLNPDQTEARGRASNKRARRSGNGDGNNDDNKSKKVKSVSSSSSAINGGRRSSVYRGVTRHRWTGRFEAHLWDKSCWNSLQNKKGRQGAYDNEEAAARTYDLAALKYWGRYSTLNFPIEIYTKELEEMDKVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAATAYDLAAIQYRGANAVTNFDISRYIDKINLIHQNSNGESQEDQTVIAIPSQVEEVGEDEEESTPNSSSESESDSENLQNQKQSPQQQLHDLEIEPENPQFQPNQNSPPNDESSPVAPVDPTTTTTDEQELPWIFMDGDGFSQFQVPDLPDGDLLSVFGDGVRRFDDDIGLLFRPDPKEGDFNLDGILSSPSCYGDLAMADSTRMVAGDDDCGGQEELPCSAKSASCSPNSLISCSDYTS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1118 451 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 SMART rav1_2 75 144 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 Gene3D AP2/ERF domain 75 141 IPR036955 GO:0003700|GO:0006355
Lele12g1118 451 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Lele12g1118 451 SUPERFAMILY DNA-binding domain 74 140 IPR016177 GO:0003677
Lele12g1118 451 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 Coils Coil 286 306 - -
Lele12g1118 451 MobiDBLite consensus disorder prediction 1 25 - -
Lele12g1118 451 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 313 - -
Lele12g1118 451 MobiDBLite consensus disorder prediction 263 341 - -
Lele12g1118 451 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 MobiDBLite consensus disorder prediction 1 71 - -
Lele12g1118 451 FunFam AP2-like ethylene-responsive transcription factor 173 234 - -
Lele12g1118 451 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Lele12g1118 451 MobiDBLite consensus disorder prediction 279 341 - -
Lele12g1118 451 MobiDBLite consensus disorder prediction 31 57 - -
Lele12g1118 451 CDD AP2 74 139 IPR001471 GO:0003700|GO:0006355
Lele12g1118 451 ProSiteProfiles AP2/ERF domain profile. 75 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1118 Lele-ChrLele12 18410034 18415725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1118 70 236 AP2-EREBP Transcription Factor Family AT5G57390 71.176 1.61e-83 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele12g1118 AP2 1.4e-08 CL0081