Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1115 ATGGGGATGGAAACCAGAAAGCTCTCAGATGAATATGAAGTTTCAGAGATCTTAGGAAGAGGAGGATTTTCTGTTGTCAGAAAAGGCATTAAAAAATCAGGCAGTGAAAAAACCCATGTAGCCATAAAAACACTCAGAAGAGTAGGTACCTCTGATCCTTTTGGATTTCCAAAACCCCAGAAAGGTAATAATAACAAGAGTATAGCTTCCATGGGGTTCCCAACAACATGGAGACAAGTTTCAATATCAGATGCTTTACTCACCAATGAGATCTTGGTCATGAGGAAGATAGTAGAGAACGTTTCACCTCATCCAAATGTGATTGACCTCTATGACGTTTATGAGGACTCGAATGGAGTTCATCTCGTTCTCGAGCTTTGTTCCGGCGGCGAGTTGTTTGACCGGATTGTGGCTCAAGAGAAGTACTCAGAGGCAGAAGCTGCAGCTGTAATTCATCAGATTGCAAAAGGACTAGAGGCAATTCACAGAGCTAATATCGTGCACAGGGATTTGAAGCCTGAGAATTGCTTGTTCCTGGACAGTAGAAAGGATTCTCCTCTAAAGATCATGGACTTTGGGTTGAGTTCTGTGGAGGAATTTACTGACCCAGTTGTTGGCTTGTTTGGATCCATTGATTATGTTTCACCAGAAGCTCTTTCTCAAGGAAAGATTACTAATAAAAGTGACATGTGGTCTGTGGGAGTAGTTCTTTATATCTTGCTCTCAGGGTATCCGCCTTTCATCGCTCAAAATAATAGCCAAAAGCAACAAATGATCATGACTGGGAGTTTCAGTTTCTATGAGAAGACTTGGAAGACCATTTCCTCATCAGCAAAGCAATTGATTTCAAGTCTCCTAGCCGTTGATCCTCATAGGAGACCTAGTGCTCATGAGATTCTTACTCATCCCTGGGTCAGAGGAGAAATAGCTAAAGGTGATCAGATGGATCCTGAGATTGTTGACAGATTGCAAAAGTTCAATGCTCGTCGCAAACTCCGTGCTGCTGCAATTGCTAGTTTATGGAGCAGCACAGTCTTCTTGAGGATTAAAAATTTGAAATCCTTGTTGGGATCCTATGATCTTACACAAGAGGAAATTGAAAATCTCAAGATACACTTCAAGAAAATTTGTGCAGATGGAGACAATGCCACTCTTCCTGAATTTGAGGAGGTGCTAAAAGCAATGGATATGTCATCACTTATTCCTCTGGCACCACGCATATTTGACATTTTTGACAACAATCAAGATGGAACAGTTGACATGCGTGAGATACTCTGTGGATTTTCCAGCCTTAAGAATTCCAAGGGCGATGATGCTCTCCGTCTCTGCTTCCAGATGTATGACACAGACCGATCTGGTTGCATTACTAAGGAAGAAGTAGCATCTATGCTAACAGCTTTGCCAGAGGATTGCCTGCCAGCTGACATCTTCGAACCAGGCAAATTAGATGAGATATTTGACCTCATGGATGCCAACAGCGATGGAAAAGTCACCTTTGAAGAATTCAAAGCTGCTATGCAGAGAGACAGCTCTCTGCAGGACGTTGTCCTTTCTTCTCTCCGCCCATCATAG 1572 0.4249 MGMETRKLSDEYEVSEILGRGGFSVVRKGIKKSGSEKTHVAIKTLRRVGTSDPFGFPKPQKGNNNKSIASMGFPTTWRQVSISDALLTNEILVMRKIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQEKYSEAEAAAVIHQIAKGLEAIHRANIVHRDLKPENCLFLDSRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITNKSDMWSVGVVLYILLSGYPPFIAQNNSQKQQMIMTGSFSFYEKTWKTISSSAKQLISSLLAVDPHRRPSAHEILTHPWVRGEIAKGDQMDPEIVDRLQKFNARRKLRAAAIASLWSSTVFLRIKNLKSLLGSYDLTQEEIENLKIHFKKICADGDNATLPEFEEVLKAMDMSSLIPLAPRIFDIFDNNQDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLTALPEDCLPADIFEPGKLDEIFDLMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRPS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1115 523 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Lele12g1115 523 Gene3D Phosphorylase Kinase; domain 1 7 52 - -
Lele12g1115 523 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Lele12g1115 523 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Lele12g1115 523 CDD EFh 406 465 IPR002048 GO:0005509
Lele12g1115 523 Gene3D - 348 516 - -
Lele12g1115 523 CDD STKc_CAMK 12 304 - -
Lele12g1115 523 SUPERFAMILY EF-hand 350 513 IPR011992 -
Lele12g1115 523 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 128 - -
Lele12g1115 523 CDD EFh 440 507 IPR002048 GO:0005509
Lele12g1115 523 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Lele12g1115 523 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 348 517 - -
Lele12g1115 523 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Lele12g1115 523 SUPERFAMILY Protein kinase-like (PK-like) 6 319 IPR011009 -
Lele12g1115 523 Gene3D Transferase(Phosphotransferase) domain 1 132 318 - -
Lele12g1115 523 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Lele12g1115 523 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 132 322 - -
Lele12g1115 523 SMART efh_1 439 467 IPR002048 GO:0005509
Lele12g1115 523 SMART efh_1 481 509 IPR002048 GO:0005509
Lele12g1115 523 SMART efh_1 403 431 IPR002048 GO:0005509
Lele12g1115 523 Pfam Protein kinase domain 95 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g1115 523 Gene3D - 319 346 - -
Lele12g1115 523 Pfam EF hand 408 423 IPR002048 GO:0005509
Lele12g1115 523 Pfam EF-hand domain pair 438 507 IPR002048 GO:0005509
Lele12g1115 523 ProSiteProfiles Protein kinase domain profile. 12 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g1115 523 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Lele12g1115 523 Gene3D Phosphorylase Kinase; domain 1 75 131 - -
Lele12g1115 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 476 - -
Lele12g1115 523 SMART serkin_6 12 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g1115 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1115 Lele-ChrLele12 18387479 18390342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1115 4 508 EF-hand Containing Proteins AT1G35670 33.792 9.11e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Lele12g1115 Pkinase 1.1e-58 CL0016