Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1105 ATGTCCCCGTCCTCCAATCTTCCTCTTCTTTTCTTCTTCCTCTTTATTCCATTACTCCTCCAAGCCCAACCTCCTCCGCCGTCTCCTTCTGCTCTCTGCAAATTCACATTGTACCCTAAACTTTGTCGTTCCATGCTCTCCGTCATCTCCTTCTCCCACTCCCCCTCCGACCCCTACAATGCCGGCAAGTTCTCCGTCAAACAGAGCCTCAAGCAAGCCAAGAAGCTCCTCAAGGTCTTCGACGACTTCCTATGCGGCCGCCGCCATTCTCAATCCTCCCCGGAGGTTCGTGCCCTCGACGACTGCCGTGACCTCAGCCTCCTCAACCTTGAATACTTGGAAGCCGTCGCTGCCGACCTCCAAGCAGCCCCAACAGCCTCCACTGAGCTCACAGACAAGGTCGAGAGCTACCTGAGCGCGGTGGCGACCAACCACTACACGTGCTACGACGGGCTTGTGGCGGCGAACAGTAACATTGGGAAAGTGCTGGCGGTGGCGTGGAGGAATGTGACGGAGGTGTATAGTGTATCGCTAGGCTTGGTGAGTGAGGCTTTGAATCAGAATGTGAAGAACAAGTTCAAGACTCGCAAGCATGGACTTCCTTCTCAGTCTTACAAAGTACGACAGCCTCTTGAGAAGCTCATTCAGGTTCTTCATCATAAGTACAGTTGCAAGGCAGCATCAAACTGCAAAACCCGAAGTGAGAGGATTATTCAGAGAGAAAGTGAAAGCAAAGGGATTCTATTAAACGGCTATGCAATAGCAAGCAATTATGGAACTGATAACTTCACCTCCATTGGAGAAGCCATTGCTGCTGCACCTACAAACCTGAAACCTGACGATGGCTACTTCCTTATCTATGTTAGAGAACGATACTATGAAGAGTATGTGATTGTTCCTAAACACAAGAAGAATATCTTGCTCATCGGTGATGGTATCAACCAGACGATCATCACAGGCAATCACAGTGGCATTGATGGTTGGACAACCTTCAATTCTTCCACCTTCGCTGTTTCTGGAGAAAGATTCATAGCAGTGGATATCACATTCAGGAACACAGCAGGTCCAGCGAAGCACCAGGCAGTAGCAGTGAGGAACAACGCAGATCTCTCGACCTTTTATCGATGCAGCTTCGAAGGATACCAAGACACACTCTATGCTCACTCCCTGAGGCAATTCTACAGAGAATGTGAGATTTATGGCACAGTAGACTTCATATTTGGCAATGCAGCTGTTGTATTCCAAGGCTGCAAGATGTATGCCAGGAAGCCACTTCCATTCCAGAAGAATGCCATCACAGCACAAGGCAGAACCGACCCGAACCAGAACACTGGAATCTCCATCCAGAATTGCACCATTGAAGCAGCACCGGATTTGGCTTCAGATTCGAACTCTACAACTACTACTAACACTACTACTGTTTTGACCTACTTGGGAAGGCCATGGAAGTTATATTCTAGAACTGTGTACATGGAATCTTATATTGGGGATGTGATTCAACCTTCTGGTTGGTTAGAGTGGAATGGGACTGTAGGATTGGACACTTTGTTTTATGGTGAGTTCAATAATTATGGACCTAGGGCCAATACTAGCAATAGGGTTCAATGGCCTGGTTTTGATCTTCTGAATGCAACTCAGGCTTTGAACTTTACTGTCCTCAATTTTACGCTGGGAGATACATGGCTTCCTGATACAGATATATCATACTCTGCAGGATTACTAGAACATTAG 1731 0.4749 MSPSSNLPLLFFFLFIPLLLQAQPPPPSPSALCKFTLYPKLCRSMLSVISFSHSPSDPYNAGKFSVKQSLKQAKKLLKVFDDFLCGRRHSQSSPEVRALDDCRDLSLLNLEYLEAVAADLQAAPTASTELTDKVESYLSAVATNHYTCYDGLVAANSNIGKVLAVAWRNVTEVYSVSLGLVSEALNQNVKNKFKTRKHGLPSQSYKVRQPLEKLIQVLHHKYSCKAASNCKTRSERIIQRESESKGILLNGYAIASNYGTDNFTSIGEAIAAAPTNLKPDDGYFLIYVRERYYEEYVIVPKHKKNILLIGDGINQTIITGNHSGIDGWTTFNSSTFAVSGERFIAVDITFRNTAGPAKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRECEIYGTVDFIFGNAAVVFQGCKMYARKPLPFQKNAITAQGRTDPNQNTGISIQNCTIEAAPDLASDSNSTTTTNTTTVLTYLGRPWKLYSRTVYMESYIGDVIQPSGWLEWNGTVGLDTLFYGEFNNYGPRANTSNRVQWPGFDLLNATQALNFTVLNFTLGDTWLPDTDISYSAGLLEH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1105 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 181 IPR006501 GO:0004857
Lele12g1105 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Lele12g1105 576 FunFam Pectinesterase 249 573 - -
Lele12g1105 576 CDD PMEI-like_3 33 183 - -
Lele12g1105 576 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Lele12g1105 576 SMART PMEI_2 24 180 IPR006501 GO:0004857
Lele12g1105 576 Gene3D - 253 575 IPR012334 -
Lele12g1105 576 Pfam Plant invertase/pectin methylesterase inhibitor 30 179 IPR006501 GO:0004857
Lele12g1105 576 PANTHER PECTINESTERASE 19 565 - -
Lele12g1105 576 SUPERFAMILY Pectin lyase-like 253 572 IPR011050 -
Lele12g1105 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 184 IPR035513 -
Lele12g1105 576 Pfam Pectinesterase 254 558 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1105 Lele-ChrLele12 18335465 18339972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1105 33 574 Carbohydrate Esterase AT3G10720 57.117 0.0 645