Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1088 ATGTCCTTAGAGCAGCCTCAGAGGGTAGTGGTGATCCGGGATGCTTCAAGAGATGTGTGTGCAAGTGCAATAAAAAAGGTTCTGAAGCAGCTTTCTCTAAAACCTGGAGATGACCTCACAATTCTTGCTCTATTTGGGAACAAAATCGTCAAGATGGATTCAAATTCAAGATCATTTATTGCAACAGATCAGGAAATTCTTCAAGAGGAACTTGGCAAGATTAAGGAAGAATGTTATAAGAGACCAAAAGTCATGAAACTTTCTGAGTATTGTGAAGCAAAAAATATAGAAGTGCTAGCGTACCCTTCTCGAGAGGTTACTTGTAATGCTGTCATGAATATATTTAGGGCAACATGCTTGATAATTGACAGACATATGAACAAAGATAAGAGGCACTTCGTGGACAATCTTGCTTGTGGTATTTATAAGATAAGGAATCGCTATAGCATTCAAATGCTAAAAAAGCCAAAACCAACAGAGAACAGCAAATCATTTGCTGAAAGATCAGAGGAACAATTTTCCCATAAGAGAACTAGATCATCATCAAGTGAGCATCTCATGGAAACCGGATTTTCGAGTCTTTCAAAGACTGAGCACCAAACATTAGGGAAACATTCAGTACTTCACATTTCTGAGAGCAAAGAGATAGGCCAAACAGAAGTACCTCAATTTGAGATGAAAGAAGAGCTCACAAACCCACTTTGTTCGGTGTGCAAGAACAAAAGACCGAAATCCGGGTGGATGAGAGACTTCAGTTACTCTGAGCTTTACACAGCCACAAAGGGATTTTCCCAGAAGAATTTTCTATCAGAAGAACACTCGCGGGCTCCACTTAGATGGGAAGATAGGATGAAAATAGCCCTTGGATCTGCTAAAGGCTTACTATATTTGCATGAGAATAACATAATACACAGAGATGTGAGAACAAACAATATCCTCTTAACACATGATCATCAACCACTGCTGGGAGACTTTGGTTTGGCGAGAAGTCAACATGAAGACTCGATCAGGTCAACAGAGCTAATAAGTGGAATGAGGATTACAGACCAAAGCCTTGAAGGCAAAAGTCTTGTCGGATGGGCAAGACCACTATTAAGAGAGAGGAATTATCCAGATCTAATTGACGAAAGGATAATGAATTCACATGATTATCATCAACTATTTTGGATGGTTCGAATTGCAGAGAAATGTCTATGCAGGGATCCTTACAAGAGATTAAACATGGGTGCCGTGGTTGATGTTTTAACTCAGATAGCGGAGGGCAAGATATGCGGGAACATAAAAAGAGATTACTTGGCTGTGAGGTCAGATTCATCATACAGCACATCAGAGGAAGAAGGTGAAGAATCATCGGAAGATGAAATAATGAAAGATGCAGAAGAAGATGAACCAGAAAGTACCAGTACTGATTCCAGCAGCAGCAACATGAGTCAGATGGATTTAGGACTCCCTAACACTCCTCCATCCCCCCCTCTAATCGATGCCACTTCCTTTAGAATGGAAACCAAAGTGCACAATGAAATGGAGATGTAG 1533 0.4038 MSLEQPQRVVVIRDASRDVCASAIKKVLKQLSLKPGDDLTILALFGNKIVKMDSNSRSFIATDQEILQEELGKIKEECYKRPKVMKLSEYCEAKNIEVLAYPSREVTCNAVMNIFRATCLIIDRHMNKDKRHFVDNLACGIYKIRNRYSIQMLKKPKPTENSKSFAERSEEQFSHKRTRSSSSEHLMETGFSSLSKTEHQTLGKHSVLHISESKEIGQTEVPQFEMKEELTNPLCSVCKNKRPKSGWMRDFSYSELYTATKGFSQKNFLSEEHSRAPLRWEDRMKIALGSAKGLLYLHENNIIHRDVRTNNILLTHDHQPLLGDFGLARSQHEDSIRSTELISGMRITDQSLEGKSLVGWARPLLRERNYPDLIDERIMNSHDYHQLFWMVRIAEKCLCRDPYKRLNMGAVVDVLTQIAEGKICGNIKRDYLAVRSDSSYSTSEEEGEESSEDEIMKDAEEDEPESTSTDSSSSNMSQMDLGLPNTPPSPPLIDATSFRMETKVHNEMEM 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1088 510 SMART tyrkin_6 39 415 IPR020635 GO:0004713|GO:0006468
Lele12g1088 510 MobiDBLite consensus disorder prediction 443 467 - -
Lele12g1088 510 MobiDBLite consensus disorder prediction 435 510 - -
Lele12g1088 510 ProSitePatterns Tyrosine protein kinases specific active-site signature. 302 314 IPR008266 GO:0004672|GO:0006468
Lele12g1088 510 PANTHER OS01G0253100 PROTEIN 278 334 IPR045271 -
Lele12g1088 510 MobiDBLite consensus disorder prediction 160 183 - -
Lele12g1088 510 MobiDBLite consensus disorder prediction 468 483 - -
Lele12g1088 510 ProSiteProfiles Protein kinase domain profile. 180 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g1088 510 Pfam Protein tyrosine and serine/threonine kinase 266 336 IPR001245 GO:0004672|GO:0006468
Lele12g1088 510 MobiDBLite consensus disorder prediction 155 188 - -
Lele12g1088 510 Gene3D Transferase(Phosphotransferase) domain 1 257 342 - -
Lele12g1088 510 SUPERFAMILY Protein kinase-like (PK-like) 268 418 IPR011009 -
Lele12g1088 510 Gene3D Transferase(Phosphotransferase) domain 1 343 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1088 Lele-ChrLele12 18226171 18230245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1088 273 429 Trihelix Transcription Factor Family AT5G38560 31.068 6.85e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lele12g1088 PK_Tyr_Ser-Thr 2.9e-14 CL0016