Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1081 ATGAGGAAGAAGCTGGATACTCGTTTCCCTGCTGCTCGGATTAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCACTAGCAGTTCCTGTTTTAGTTTCTAAAGCTCTAGAGCTGTTTCTGCAAGACCTTTGTGATCGTACATATGAAATAACTCTTCAGAGAGGTGCAAAGACAATGAGTGCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGATTTTCTGAAGGATGTCGTCAGCAGGGTTCCTGACTATGGCCATGGGCATGGACATAACCATACTGAGACTGGCGCTGATGATCGGATCATTCCAAGAAGAAGGAAAGCAGCAAATGATGATCACCATGATAGCGATGATGACTCTAAGAGAAGCAAGATGCATGAGGTTAGCCATACCGGCAGTAGTGGTAGGGGAAGAGGCCGAGGTAGAGGGAGGGGCCGTGGTCGAGGGGCTCGAAATGTTGAACGGGAAAGAGAGACTCATCATCAAGAGCTTGAAACTGAACCTTGCACTTCTGCTCTGAACAGCAGCAAACATAATCCTGATACAAATGTGGCAATTGATAATGGTTCAGAGCCAAAGGAGTTACTGAAAGAGAATAATGCAATTCCTGATGATGGCACTCAATCTGTCCGTAACATTGATCTGAATGCCAATTTGAATGAAAACGAAGACAAAAATGCTAGCACAGCGGTAACCGACGTCCCTTTGCCTGATCCTCCAAAACCTGAGACTACTGATCCTCCAAAACCTGAGACTGAGCATGAAGAAATCCCTGGCTGGTCTCTTTCTGATGTGGACAAGATGGTCATTGACTCTATGCAGCTTGCACACCTTAGTAGACCTATGGAAGAGGATGAGGAAGATTATGATGAAGAAGGGTGA 900 0.4433 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLKDVVSRVPDYGHGHGHNHTETGADDRIIPRRRKAANDDHHDSDDDSKRSKMHEVSHTGSSGRGRGRGRGRGRGRGARNVERERETHHQELETEPCTSALNSSKHNPDTNVAIDNGSEPKELLKENNAIPDDGTQSVRNIDLNANLNENEDKNASTAVTDVPLPDPPKPETTDPPKPETEHEEIPGWSLSDVDKMVIDSMQLAHLSRPMEEDEEDYDEEG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1081 299 MobiDBLite consensus disorder prediction 91 195 - -
Lele12g1081 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lele12g1081 299 MobiDBLite consensus disorder prediction 250 267 - -
Lele12g1081 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 133 - -
Lele12g1081 299 MobiDBLite consensus disorder prediction 227 299 - -
Lele12g1081 299 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Lele12g1081 299 FunFam dr1-associated corepressor homolog 1 86 - -
Lele12g1081 299 MobiDBLite consensus disorder prediction 91 139 - -
Lele12g1081 299 SUPERFAMILY Histone-fold 4 93 IPR009072 GO:0046982
Lele12g1081 299 MobiDBLite consensus disorder prediction 153 171 - -
Lele12g1081 299 MobiDBLite consensus disorder prediction 172 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1081 Lele-ChrLele12 18194228 18197629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1081 1 286 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.658 3.64e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele12g1081 CBFD_NFYB_HMF 2.8e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0178 09 1260746 1264195 Lele12g1081 12 18194228 18197629 hybridization
Lele10g0179 10 1164174 1167515 Lele12g1081 12 18194228 18197629 hybridization